Evidence map›Paper›PMID 28746368›Full record

ArticlePloS one2017

The genome-wide identification and transcriptional levels of DNA methyltransferases and demethylases in globe artichoke.

Silvia Gianoglio, Andrea Moglia, Alberto Acquadro, Cinzia Comino, Ezio Portis

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. DNA Methyltransferases: From Evolution to Clinical Applications.International journal of molecular sciences · 2022
    Review
  4. Article
  5. Article
  6. Article
  7. Genome-Wide Identification of Epigenetic Regulators inInternational journal of molecular sciences · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Silvia GianoglioDepartment of Agricultural, Forest and Food Sciences, University of Torino, Grugliasco, Italy.
Andrea MogliaDepartment of Agricultural, Forest and Food Sciences, University of Torino, Grugliasco, Italy.
Alberto AcquadroDepartment of Agricultural, Forest and Food Sciences, University of Torino, Grugliasco, Italy.
Cinzia CominoDepartment of Agricultural, Forest and Food Sciences, University of Torino, Grugliasco, Italy.ORCID http://orcid.org/0000-0002-1503-505X
Ezio PortisDepartment of Agricultural, Forest and Food Sciences, University of Torino, Grugliasco, Italy.
University of Turin · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Changes to the cytosine methylation status of DNA, driven by the activity of C5 methyltransferases (C5-MTases) and demethylases, exert an important influence over development, transposon movement, gene expression and imprinting. Three groups of C5-MTase enzymes have been identified in plants, namely MET (methyltransferase 1), CMT (chromomethyltransferases) and DRM (domains rearranged methyltransferases). Here the repertoire of genes encoding C5-MTase and demethylase by the globe artichoke (Cynara cardunculus var. scolymus) is described, based on sequence homology, a phylogenetic analysis and a characterization of their functional domains. A total of ten genes encoding C5-MTase (one MET, five CMTs and four DRMs) and five demethylases was identified. An analysis of their predicted product's protein structure suggested an extensive level of conservation has been retained by the C5-MTases. Transcriptional profiling based on quantitative real time PCR revealed a number of differences between the genes encoding maintenance and de novo methyltransferases, sometimes in a tissue- or development-dependent manner, which implied a degree of functional specialization.

Indexed as

Chromosome MappingChromosomes, PlantCynara scolymusDNA (Cytosine-5-)-MethyltransferasesGene Expression ProfilingGene Expression Regulation, EnzymologicGene Expression Regulation, PlantGenome, PlantHistone DemethylasesIsoenzymesModels, MolecularPhylogenyPlant ProteinsProtein ConformationReverse Transcriptase Polymerase Chain ReactionDNA (Cytosine-5-)-MethyltransferasesHistone DemethylasesIsoenzymesPlant Proteins

Identifiers

PMID28746368
PMCPMC5529103
OpenAlexW2737144509

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.