Evidence map›Paper›PMID 28745046›Full record

ArticleThe journal of physical chemistry. B2017

All-Atom MD Predicts Magnesium-Induced Hairpin in Chemically Perturbed RNA Analog of F10 Therapeutic.

Ryan L Melvin, William H Gmeiner, Freddie R Salsbury

Abstract read
In one paragraph

Article in The journal of physical chemistry. B, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ryan L MelvinDepartment of Physics, Wake Forest University , Winston-Salem, North Carolina 27109, United States.
William H GmeinerDepartment of Cancer Biology, Wake Forest University School of Medicine , Winston-Salem North Carolina 27101, United States.
Freddie R SalsburyDepartment of Physics, Wake Forest University , Winston-Salem, North Carolina 27109, United States.ORCID 0000-0002-2699-829X

Funding

Tumor Tissue CoreP30CA012197 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI Ruben A. Mesa · 1985 to 2026
$55.4M
Structural and Computational Biophysics Training ProgramT32GM095440 · NIGMS · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI HOLLIS, THOMAS J, LYLES, DOUGLAS S. · 2011 to 2020
$1.7M
Targeting the MSH2-dependent Apoptotic PathwayR01CA129373 · NCI · WAKE FOREST UNIVERSITY · PI SALSBURY, FREDDIE R. · 2009 to 2013
$1.6M
NCI NIH HHS P30 CA012197NCI NIH HHS R01 CA129373NIGMS NIH HHS T32 GM095440
6 · The paper itself

Abstract

Given their increasingly frequent usage, understanding the chemical and structural properties which allow therapeutic nucleic acids to promote the death of cancer cells is critical for medical advancement. One molecule of interest is a 10-mer of FdUMP (5-fluoro-2'-deoxyuridine-5'-O-monophosphate) also called F10. To investigate causes of structural stability, we have computationally restored the 2' oxygen on each ribose sugar of the phosphodiester backbone, creating FUMP[10]. Microsecond time-scale, all-atom, simulations of FUMP[10] in the presence of 150 mM MgCl

Indexed as

Molecular Dynamics SimulationFluorodeoxyuridylateMagnesiumNucleic Acid ConformationRNAFdUMP(10)FluorodeoxyuridylateMagnesiumRNA

Identifiers

PMID28745046
PMCPMC5719488

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.