Evidence map›Paper›PMID 28744486›Full record

ArticlemSystems

Multi-omics Analysis of Periodontal Pocket Microbial Communities Pre- and Posttreatment.

Katy J Califf, Karen Schwarzberg-Lipson, Neha Garg, Sean M Gibbons, J Gregory Caporaso, Jørgen Slots, Chloe Cohen, Pieter C Dorrestein, Scott T Kelley

Open access · goldAbstract read
In one paragraph

Article in mSystems. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 1 pooled it
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 1 synthesis or guideline pooled it, 63 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Site-specialization of human oralbioRxiv : the preprint server for biology · 2026
    Article
  4. Spatial ecology of theMicrobiology spectrum · 2026
    Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Omics for deciphering oral microecology.International journal of oral science · 2024
    Review
  18. Article
  19. Genomic Medicine in Canine Periodontal Disease: A Systematic Review.Animals : an open access journal from MDPI · 2023
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Katy J CaliffCenter for Microbial Genetics and Genomics and Department of Biological Sciences, Northern Arizona University, Flagstaff, Arizona, USA.
Karen Schwarzberg-LipsonCenter for Microbial Genetics and Genomics and Department of Biological Sciences, Northern Arizona University, Flagstaff, Arizona, USA.
Neha GargCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, California, USA.
Sean M GibbonsDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
J Gregory CaporasoCenter for Microbial Genetics and Genomics and Department of Biological Sciences, Northern Arizona University, Flagstaff, Arizona, USA.ORCID 0000-0002-8865-1670
Jørgen SlotsHerman Ostrow School of Dentistry, University of Southern California, Los Angeles, California, USA.
Chloe CohenHerman Ostrow School of Dentistry, University of Southern California, Los Angeles, California, USA.
Pieter C DorresteinCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, California, USA.
Scott T KelleyDepartment of Biology, San Diego State University, San Diego, California, USA.ORCID 0000-0001-9547-4169
Northern Arizona University · USUniversity of California San Diego · USUniversity of Southern California · USMassachusetts Institute of Technology · USSan Diego State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Periodontitis is a polymicrobial infectious disease that causes breakdown of the periodontal ligament and alveolar bone. We employed a meta-omics approach that included microbial 16S rRNA amplicon sequencing, shotgun metagenomics, and tandem mass spectrometry to analyze sub- and supragingival biofilms in adults with chronic periodontitis pre- and posttreatment with 0.25% sodium hypochlorite. Microbial samples were collected with periodontal curettes from 3- to 12-mm-deep periodontal pockets at the baseline and at 2 weeks and 3 months. All data types showed high interpersonal variability, and there was a significant correlation between phylogenetic diversity and pocket depth at the baseline and a strong correlation (rho = 0.21;

Indexed as

16S rRNAdiagnosticsmetabolomemicrobiomemolecular networkingperiodontal diseaseperiodontitisshotgun metagenomics

Identifiers

PMID28744486
PMCPMC5513737
OpenAlexW2701723414

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.