Evidence map›Paper›PMID 28744024›Full record

ArticleScientific reports2017

Recent increased identification and transmission of HIV-1 unique recombinant forms in Sweden.

Ujjwal Neogi, Abu Bakar Siddik, Prabhav Kalaghatgi, Magnus Gisslén, Göran Bratt, Gaetano Marrone, Anders Sönnerborg

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Information Theoretic Study of COVID-19 Genome.Entropy (Basel, Switzerland) · 2024
    Article
  2. The molecular epidemiology of HIV-1 in Sweden 1996 to 2022, and the influence of migration from Ukraine.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2023
    Article
  3. Article
  4. Article
  5. Article
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  7. Characterisation of HIV-1 transmission clusters and drug-resistant mutations in Denmark, 2004 to 2016.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ujjwal NeogiDivision of Clinical Microbiology, Department of Laboratory Medicine, Karolinska Institutet, Huddinge, Stockholm, Sweden. ujjwal.neogi@ki.se.
Abu Bakar SiddikDivision of Clinical Microbiology, Department of Laboratory Medicine, Karolinska Institutet, Huddinge, Stockholm, Sweden.ORCID 0000-0003-0037-7679
Prabhav KalaghatgiDepartment of Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbrücken, Germany.
Magnus GisslénDepartment of Infectious Diseases, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
Göran BrattDepartment of Infectious Diseases, South Hospital, Stockholm, Sweden.
Gaetano MarroneDepartment of Public Health Sciences, Karolinska Institutet, Solna, Sweden.
Anders SönnerborgDivision of Clinical Microbiology, Department of Laboratory Medicine, Karolinska Institutet, Huddinge, Stockholm, Sweden.

Funding

Reverse Transcriptase Multi-Class Drug Resistance and Rilpivirine Susceptibility in Diverse HIV-1 SubtypesR01GM118012 · NIGMS · UNIVERSITY OF MISSOURI-COLUMBIA · PI SARAFIANOS, STEFAN G · 2016 to 2019
$1.6M
NIGMS NIH HHS R01 GM118012
6 · The paper itself

Abstract

A temporal increase in non-B subtypes has earlier been described in Sweden by us and we hypothesized that this increased viral heterogeneity may become a hotspot for the development of more complex and unique recombinant forms (URFs) if the epidemics converge. In the present study, we performed subtyping using four automated tools and phylogenetic analysis by RAxML of pol gene sequences (n = 5246) and HIV-1 near full-length genome (HIV-NFLG) sequences (n = 104). A CD4

Indexed as

AdultAlgorithmsCD4-Positive T-LymphocytesEpidemicsFemaleGenotyping TechniquesHIV-1HIV InfectionsHIV SeropositivityHomosexuality, MaleHumansMaleMiddle AgedMolecular TypingPhylogenypol Gene Products, Human Immunodeficiency Viruspol Gene Products, Human Immunodeficiency Virus

Identifiers

PMID28744024
PMCPMC5527090

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.