Evidence map›Paper›PMID 28743993›Full record

ArticleScientific reports2017

YY1's role in the Peg3 imprinted domain.

Hongzhi He, An Ye, Bambarendage P U Perera, Joomyeong Kim

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.5field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Frontiers in cell and developmental biology · 2018
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Hongzhi HeDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA, 70803, USA.
An YeDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA, 70803, USA.
Bambarendage P U PereraDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA, 70803, USA.
Joomyeong KimDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA, 70803, USA. jkim@lsu.edu.
Louisiana State University · US

Funding

Imprinting studies of a paternally expressed Usp29 geneR01GM066225 · NIGMS · UNIVERSITY OF CALIF-LAWRNC LVRMR NAT LAB · PI KIM, JOOMYEONG · 2004 to 2013
$2.6M
Aebp2 as an epigenetic regulator for neural crest cellR01GM097074 · NIGMS · LOUISIANA STATE UNIV A&M COL BATON ROUGE · PI KIM, JOOMYEONG · 2013 to 2016
$1.1M
NIGMS NIH HHS R01 GM066225NIGMS NIH HHS R01 GM097074
6 · The paper itself

Abstract

The ICR (Imprinting Control Region) of the Peg3 (Paternally Expressed Gene 3) domain contains an unusual cluster of YY1 binding sites. In the current study, these YY1 binding sites were mutated to characterize the unknown roles in the mouse Peg3 domain. According to the results, paternal and maternal transmission of the mutant allele did not cause any major effect on the survival of the pups. In the mutants, the maternal-specific DNA methylation on the ICR was properly established and maintained, causing no major effect on the imprinting of the domain. In contrast, the paternal transmission resulted in changes in the expression levels of several genes: down-regulation of Peg3 and Usp29 and up-regulation of Zim1. These changes were more pronounced during the neonatal stage than during the adult stage. In the case of Peg3 and Zim1, the levels of the observed changes were also different between males and females, suggesting the different degrees of YY1 involvement between two sexes. Overall, the results indicated that YY1 is mainly involved in controlling the transcriptional levels, but not the DNA methylation, of the Peg3 domain.

Indexed as

AnimalsBinding SitesCarrier ProteinsChromatinDNA-Binding ProteinsDNA MethylationFemaleGene Expression RegulationGenomic ImprintingKruppel-Like Transcription FactorsMaleMice, KnockoutMutationNerve Tissue ProteinsPhenotypeProtein DomainsCarrier ProteinsChromatinDNA-Binding ProteinsKruppel-Like Transcription FactorsNerve Tissue ProteinsPeg3 protein, mouseUbiquitin-Specific ProteasesUsp29 protein, mouseYy1 protein, mouseYY1 Transcription FactorZim1 protein, mouse

Identifiers

PMID28743993
PMCPMC5526879
OpenAlexW2736695998

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.