Evidence map›Paper›PMID 28743971›Full record

ArticleScientific reports2017

Muscle transcriptome analysis reveals molecular pathways and biomarkers involved in extreme ultimate pH and meat defect occurrence in chicken.

Stéphane Beauclercq, Christelle Hennequet-Antier, Christophe Praud, Estelle Godet, Anne Collin, Sophie Tesseraud, Sonia Métayer-Coustard, Marie Bourin, Marco Moroldo, Frédéric Martins and 3 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 50 citations in OpenAlex.

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  14. Physical, Chemical and Histological Characterization ofAnimals : an open access journal from MDPI · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 1 country.

Stéphane BeauclercqURA, INRA, F-37380, Nouzilly, France.ORCID 0000-0002-1029-559X
Christelle Hennequet-AntierURA, INRA, F-37380, Nouzilly, France.
Christophe PraudURA, INRA, F-37380, Nouzilly, France.
Estelle GodetURA, INRA, F-37380, Nouzilly, France.
Anne CollinURA, INRA, F-37380, Nouzilly, France.
Sophie TesseraudURA, INRA, F-37380, Nouzilly, France.
Sonia Métayer-CoustardURA, INRA, F-37380, Nouzilly, France.
Marie BourinITAVI-Institut Technique de l'Aviculture, F-37380, Nouzilly, France.
Marco MoroldoGABI, AgroParisTech, INRA, Université Paris-Saclay, F-78350, Jouy-en-Josas, France.
Frédéric MartinsPlateforme Génome et Transcriptome, Génopole de Toulouse, France.
Sandrine LagarriguePEGASE, Agrocampus Ouest, INRA, F-35590, Saint-Gilles, France.
Elisabeth Le Bihan-DuvalURA, INRA, F-37380, Nouzilly, France.
Cécile BerriURA, INRA, F-37380, Nouzilly, France. cecile.berri@inra.fr.
Biologie des oiseaux et aviculture · FRAgroParisTech · FRInserm · FRInstitut Agro Rennes-Angers · FRInstitut Technique de l'Aviculture · FRPhysiologie de la Reproduction et des Comportements · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The processing ability and sensory quality of chicken breast meat are highly related to its ultimate pH (pHu), which is mainly determined by the amount of glycogen in the muscle at death. To unravel the molecular mechanisms underlying glycogen and meat pHu variations and to identify predictive biomarkers of these traits, a transcriptome profiling analysis was performed using an Agilent custom chicken 8 × 60 K microarray. The breast muscle gene expression patterns were studied in two chicken lines experimentally selected for high (pHu+) and low (pHu-) pHu values of the breast meat. Across the 1,436 differentially expressed (DE) genes found between the two lines, many were involved in biological processes related to muscle development and remodelling and carbohydrate and energy metabolism. The functional analysis showed an intensive use of carbohydrate metabolism to produce energy in the pHu- line, while alternative catabolic pathways were solicited in the muscle of the pHu+ broilers, compromising their muscle development and integrity. After a validation step on a population of 278 broilers using microfluidic RT-qPCR, 20 genes were identified by partial least squares regression as good predictors of the pHu, opening new perspectives of screening broilers likely to present meat quality defects.

Indexed as

Poultry ProductsAnimalsBiomarkersChickensGene ExpressionGene Expression ProfilingGenetic MarkersHydrogen-Ion ConcentrationLab-On-A-Chip DevicesLeast-Squares AnalysisPectoralis MusclesReproducibility of ResultsReverse Transcriptase Polymerase Chain ReactionBiomarkersGenetic Markers

Identifiers

PMID28743971
PMCPMC5526995
OpenAlexW2951876272

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.