Evidence map›Paper›PMID 28743884›Full record

ArticleNature communications2017

Molecular mechanisms of Bdp1 in TFIIIB assembly and RNA polymerase III transcription initiation.

Jerome Gouge, Nicolas Guthertz, Kevin Kramm, Oleksandr Dergai, Guillermo Abascal-Palacios, Karishma Satia, Pascal Cousin, Nouria Hernandez, Dina Grohmann, Alessandro Vannini

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 59 citations in OpenAlex.

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  18. Reply to Schramm, L. Comment on "Li et al.Diagnostics (Basel, Switzerland) · 2022
    Article
  19. Article
  20. Diagnostics (Basel, Switzerland) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Jerome GougeThe Institute of Cancer Research, London, SW7 3RP, UK.
Nicolas GuthertzThe Institute of Cancer Research, London, SW7 3RP, UK.
Kevin KrammDepartment of Biochemistry, Genetics and Microbiology, Institute of Microbiology, University of Regensburg, 93053, Regensburg, Germany.
Oleksandr DergaiCenter for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015, Lausanne, Switzerland.
Guillermo Abascal-PalaciosThe Institute of Cancer Research, London, SW7 3RP, UK.
Karishma SatiaThe Institute of Cancer Research, London, SW7 3RP, UK.
Pascal CousinCenter for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015, Lausanne, Switzerland.
Nouria HernandezCenter for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015, Lausanne, Switzerland.
Dina GrohmannDepartment of Biochemistry, Genetics and Microbiology, Institute of Microbiology, University of Regensburg, 93053, Regensburg, Germany.
Alessandro VanniniThe Institute of Cancer Research, London, SW7 3RP, UK. alessandro.vannini@icr.ac.uk.
Institute of Cancer Research · GBUniversity of Lausanne · CHUniversity of Regensburg · DE

Funding

Cancer Research UK 21536Wellcome Trust
6 · The paper itself

Abstract

Initiation of gene transcription by RNA polymerase (Pol) III requires the activity of TFIIIB, a complex formed by Brf1 (or Brf2), TBP (TATA-binding protein), and Bdp1. TFIIIB is required for recruitment of Pol III and to promote the transition from a closed to an open Pol III pre-initiation complex, a process dependent on the activity of the Bdp1 subunit. Here, we present a crystal structure of a Brf2-TBP-Bdp1 complex bound to DNA at 2.7 Å resolution, integrated with single-molecule FRET analysis and in vitro biochemical assays. Our study provides a structural insight on how Bdp1 is assembled into TFIIIB complexes, reveals structural and functional similarities between Bdp1 and Pol II factors TFIIA and TFIIF, and unravels essential interactions with DNA and with the upstream factor SNAPc. Furthermore, our data support the idea of a concerted mechanism involving TFIIIB and RNA polymerase III subunits for the closed to open pre-initiation complex transition.Transcription initiation by RNA polymerase III requires TFIIIB, a complex formed by Brf1/Brf2, TBP and Bdp1. Here, the authors describe the crystal structure of a Brf2-TBP-Bdp1 complex bound to a DNA promoter and characterize the role of Bdp1 in TFIIIB assembly and pre-initiation complex formation.

Indexed as

Transcription Initiation, GeneticAmino Acid SequenceCrystallography, X-RayDNAHumansModels, MolecularNucleic Acid ConformationPromoter Regions, GeneticProtein BindingProtein DomainsRNA Polymerase IIISequence Homology, Amino AcidTATA-Box Binding ProteinTranscription Factor TFIIIBBDP1 protein, humanBRF2 protein, humanDNARNA Polymerase IIITATA-Box Binding ProteinTBP protein, humanTranscription Factor TFIIIB

Identifiers

PMID28743884
PMCPMC5526994
OpenAlexW2739230695

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.