Evidence map›Paper›PMID 28743860›Full record

ArticleNature communications2017

Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.

Carolina Medina-Gomez, John P Kemp, Niki L Dimou, Eskil Kreiner, Alessandra Chesi, Babette S Zemel, Klaus Bønnelykke, Cindy G Boer, Tarunveer S Ahluwalia, Hans Bisgaard and 24 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed, 5 pooled it
10.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 5 syntheses or guidelines pooled it, 96 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors at 19 institutions in 9 countries.

Carolina Medina-GomezDepartment of Internal Medicine, Erasmus MC University, Rotterdam, 3015GE, The Netherlands.ORCID http://orcid.org/0000-0001-7999-5538
John P KempUniversity of Queensland Diamantina Institute, Translational Research Institute, Brisbane, Queensland, 4102, Australia.ORCID http://orcid.org/0000-0002-9105-2249
Niki L DimouDepartment of Computer Science and Biomedical Informatics of the University of Thessaly, Lamia, GR 35100, Greece.
Eskil KreinerCOPSAC, Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofte Hospital, University of Copenhagen, Copenhagen, 2820, Denmark.
Alessandra ChesiDivision of Human Genetics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA.
Babette S ZemelDivision of GI, Hepatology, and Nutrition, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA.
Klaus BønnelykkeCOPSAC, Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofte Hospital, University of Copenhagen, Copenhagen, 2820, Denmark.
Cindy G BoerDepartment of Internal Medicine, Erasmus MC University, Rotterdam, 3015GE, The Netherlands.ORCID http://orcid.org/0000-0003-4809-0044
Tarunveer S AhluwaliaCOPSAC, Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofte Hospital, University of Copenhagen, Copenhagen, 2820, Denmark.ORCID http://orcid.org/0000-0002-7464-3354
Hans BisgaardCOPSAC, Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofte Hospital, University of Copenhagen, Copenhagen, 2820, Denmark.
Evangelos EvangelouDepartment of Hygiene and Epidemiology, University of Ioannina Medical School, Ioannina, 45110, Greece.
Denise H M HeppeThe Generation R Study Group, Erasmus Medical Center, Rotterdam, 3015GE, The Netherlands.
Lynda F BonewaldDepartments of Anatomy and Cell Biology and Orthopaedic Surgery, School of Medicine, Indiana University, Indianapolis, IN, 46202, USA.
Jeffrey P GorskiDepartment of Oral and Craniofacial Sciences, School of Dentistry, University of Missouri-Kansas City, Kansas City, MO, 64108, USA.
Mohsen GhanbariDepartment of Epidemiology, Erasmus Medical Center, Rotterdam, 3015GE, The Netherlands.
Serkalem DemissieDepartment of Biostatistics, Boston University School of Public Health, Boston, MA, 02131, USA.
Gustavo DuqueAustralian Institute for Musculoskeletal Science (AIMSS), The University of Melbourne and Western Health, St Albans, Victoria, 3021, Australia.
Matthew T MauranoInstitute for Systems Genetics, New York University Langone Medical Center, New York, NY, 10016, USA.
Douglas P KielHebrew SeniorLife, Institute for Aging Research, Roslindale, MA, 02131, USA.
Yi-Hsiang HsuHebrew SeniorLife, Institute for Aging Research, Roslindale, MA, 02131, USA.
Bram C J van der EerdenDepartment of Internal Medicine, Erasmus MC University, Rotterdam, 3015GE, The Netherlands.
Cheryl Ackert-BicknellCenter for Musculoskeletal Research, University of Rochester, Rochester, NY, 14642, USA.
Sjur ReppeDepartment of Medical Biochemistry, Oslo University Hospital, Ullevaal, 0450, Oslo, Norway.
Kaare M GautvikUnger-Vetlesen Institute, Oslo Diakonale Hospital, 0456, Oslo, Norway.
Truls RaastadDepartment of Physical Performance, Norwegian School of Sports Sciences, 0863, Oslo, Norway.
David KarasikHebrew SeniorLife, Institute for Aging Research, Roslindale, MA, 02131, USA.
Jeroen van de PeppelDepartment of Internal Medicine, Erasmus MC University, Rotterdam, 3015GE, The Netherlands.
Vincent W V JaddoeThe Generation R Study Group, Erasmus Medical Center, Rotterdam, 3015GE, The Netherlands.
André G UitterlindenDepartment of Internal Medicine, Erasmus MC University, Rotterdam, 3015GE, The Netherlands.
Jonathan H TobiasSchool of Clinical Sciences, University of Bristol, Bristol, BS10 5NB, UK.
Struan F A GrantDivision of Human Genetics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA.
Pantelis G BagosDepartment of Computer Science and Biomedical Informatics of the University of Thessaly, Lamia, GR 35100, Greece.
David M EvansUniversity of Queensland Diamantina Institute, Translational Research Institute, Brisbane, Queensland, 4102, Australia.
Fernando RivadeneiraDepartment of Internal Medicine, Erasmus MC University, Rotterdam, 3015GE, The Netherlands. f.rivadeneira@erasmusmc.nl.ORCID http://orcid.org/0000-0001-9435-9441
Erasmus MC · NLUniversity of Copenhagen · DKChildren's Hospital of Philadelphia · USBroad Institute · USTranslational Research Institute · AUUniversity of Thessaly · GRBar-Ilan University · ILBoston University · USIndiana University Indianapolis · USMashhad University of Medical Sciences · IRNorwegian School of Sport Sciences · NONYU Langone Health · USOslo University Hospital · NOThe University of Melbourne · AUUniversity of Bristol · GBUniversity of Ioannina · GRUniversity of Missouri–Kansas City · USUniversity of Oslo · NOUniversity of Rochester · US

Funding

Building on GWAS for NHLBI-disease: the CHARGE consortiumRC2HL102419 · NHLBI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI BOERWINKLE, ERIC A. · 2009 to 2010
$27.6M
RISK FACTORS FOR VERTEBRAL FRACTURE AND BONE LOSSR01AR041398 · NIAMS · RHODE ISLAND HOSPITAL (PROVIDENCE, RI) · PI KIEL, DOUGLAS P. · 1991 to 2025
$16.1M
ZIDOVUDINE VS 2',3'DIDEHYDRO-3'DEOXYTHYMIDINE IN CHILDRENM01RR000240 · NCRR · CHILDREN'S HOSP OF PHILADELPHIA · PI ALTSCHULER, STEVEN M · 1985 to 2006
$15.3M
CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR026314 · NCRR · UNIVERSITY OF CINCINNATI · PI HEUBI, JAMES E. · 2009 to 2011
$14.3M
Genome Wide Association Study of Bone Mineral Accretion During ChildhoodR01HD058886 · NICHD · CHILDREN'S HOSP OF PHILADELPHIA · PI GRANT, STRUAN F A, ZEMEL, BABETTE S · 2010 to 2013
$3.1M
Medical Research Council G9815508Medical Research Council MC_PC_15018Medical Research Council MC_UU_12013/4NCRR NIH HHS M01 RR000240NCRR NIH HHS UL1 RR026314NHLBI NIH HHS RC2 HL102419NIAMS NIH HHS R01 AR041398NICHD NIH HHS R01 HD058886Wellcome Trust
6 · The paper itself

Abstract

Bone mineral density is known to be a heritable, polygenic trait whereas genetic variants contributing to lean mass variation remain largely unknown. We estimated the shared SNP heritability and performed a bivariate GWAS meta-analysis of total-body lean mass (TB-LM) and total-body less head bone mineral density (TBLH-BMD) regions in 10,414 children. The estimated SNP heritability is 43% (95% CI: 34-52%) for TBLH-BMD, and 39% (95% CI: 30-48%) for TB-LM, with a shared genetic component of 43% (95% CI: 29-56%). We identify variants with pleiotropic effects in eight loci, including seven established bone mineral density loci: WNT4, GALNT3, MEPE, CPED1/WNT16, TNFSF11, RIN3, and PPP6R3/LRP5. Variants in the TOM1L2/SREBF1 locus exert opposing effects TB-LM and TBLH-BMD, and have a stronger association with the former trait. We show that SREBF1 is expressed in murine and human osteoblasts, as well as in human muscle tissue. This is the first bivariate GWAS meta-analysis to demonstrate genetic factors with pleiotropic effects on bone mineral density and lean mass.Bone mineral density and lean skeletal mass are heritable traits. Here, Medina-Gomez and colleagues perform bivariate GWAS analyses of total body lean mass and bone mass density in children, and show genetic loci with pleiotropic effects on both traits.

Indexed as

Genetic PleiotropyMeta-Analysis as TopicBody WeightBone DensityCarrier ProteinsChildFemaleGene ExpressionGenome-Wide Association StudyHumansMaleMultivariate AnalysisMusculoskeletal DevelopmentPolymorphism, Single NucleotideQuantitative Trait LociSterol Regulatory Element Binding Protein 1Carrier ProteinsSREBF1 protein, humanSterol Regulatory Element Binding Protein 1TOM1L2 protein, human

Identifiers

PMID28743860
PMCPMC5527106
OpenAlexW2738307791

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.