Evidence map›Paper›PMID 28743640›Full record

ReviewSeminars in cell & developmental biology2017

Structural origins of clustered protocadherin-mediated neuronal barcoding.

Rotem Rubinstein, Kerry Marie Goodman, Tom Maniatis, Lawrence Shapiro, Barry Honig

Abstract readReview
In one paragraph

Review in Seminars in cell & developmental biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Surface delivery quantification reveals distinct trafficking efficiencies among clustered protocadherin isoforms.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Clustered protocadherinProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Article
  10. Visualization ofiScience · 2023
    Article
  11. Article
  12. Structure and evolution of neuronal wiring receptors and ligands.Developmental dynamics : an official publication of the American Association of Anatomists · 2023
    Review
  13. Article
  14. Adhesion-Based Self-Organization in Tissue Patterning.Annual review of cell and developmental biology · 2022
    Review
  15. Article
  16. On the formation of ordered protein assemblies in cell-cell interfaces.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  17. The evolution of synaptic and cognitive capacity: Insights from the nervous system transcriptome ofProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Rotem RubinsteinDepartment of Biochemistry and Molecular Biophysics, New York, NY 10032, USA; Department of Systems Biology, New York, NY 10032, USA.
Kerry Marie GoodmanDepartment of Biochemistry and Molecular Biophysics, New York, NY 10032, USA.
Tom ManiatisDepartment of Biochemistry and Molecular Biophysics, New York, NY 10032, USA; Zuckerman Mind Brain and Behavior Institute, New York, NY 10032, USA. Electronic address: tm2472@cumc.columbia.edu.
Lawrence ShapiroDepartment of Biochemistry and Molecular Biophysics, New York, NY 10032, USA; Zuckerman Mind Brain and Behavior Institute, New York, NY 10032, USA. Electronic address: shapiro@convex.hhmi.columbia.edu.
Barry HonigDepartment of Biochemistry and Molecular Biophysics, New York, NY 10032, USA; Department of Systems Biology, New York, NY 10032, USA; Zuckerman Mind Brain and Behavior Institute, New York, NY 10032, USA; Howard Hughes Medical Institute, New York, NY 10032, USA; Department of Medicine, Columbia University, New York, NY 10032, USA. Electronic address: bh6@cumc.columbia.edu.

Funding

Protocadherin Gene Expression and FunctionR01NS043915 · NINDS · HARVARD UNIVERSITY · PI MANIATIS, THOMAS P · 2002 to 2011
$6.5M
MOLECULAR BASIS OF CADHERIN MEDIATED CELL ADHESIONR01GM062270 · NIGMS · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI SHAPIRO, LAWRENCE S · 2001 to 2015
$3.4M
The structural basis of cis and trans protocadherin interactionsR01MH114817 · NIMH · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MANIATIS, THOMAS P, SHAPIRO, LAWRENCE S · 2017 to 2021
$2.4M
High-performance compute cluster for biomedical computingS10OD012351 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2012 to 2012
$2.0M
The structural basis of cis and trans protocadherin interactionsR01GM107571 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MANIATIS, THOMAS P, SHAPIRO, LAWRENCE S · 2013 to 2016
$1.8M
The Role of Clustered Protocadherins in Neurite Self-avoidanceR01NS088476 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MANIATIS, THOMAS P · 2015 to 2018
$1.5M
Storage System for High Performance ComputingS10OD021764 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2016 to 2016
$600k
NIGMS NIH HHS R01 GM062270NIGMS NIH HHS R01 GM107571NIH HHS S10 OD012351NIH HHS S10 OD021764NIMH NIH HHS R01 MH114817NINDS NIH HHS R01 NS043915NINDS NIH HHS R01 NS088476
6 · The paper itself

Abstract

Clustered protocadherins mediate neuronal self-recognition and non-self discrimination-neuronal "barcoding"-which underpin neuronal self-avoidance in vertebrate neurons. Recent structural, biophysical, computational, and cell-based studies on protocadherin structure and function have led to a compelling molecular model for the barcoding mechanism. Protocadherin isoforms assemble into promiscuous cis-dimeric recognition units and mediate cell-cell recognition through homophilic trans-interactions. Each recognition unit is composed of two arms extending from the membrane proximal EC6 domains. A cis-dimeric recognition unit with each arm coding adhesive trans homophilic specificity can generate a zipper-like assembly that in turn suggests a chain termination mechanism for self-vs-non-self-discrimination among vertebrate neurons.

Indexed as

AnimalsCadherinsHumansModels, MolecularNeuronsPhylogenyProtein MultimerizationStructure-Activity RelationshipCadherinsCell-cell recognitionClustered protocadherinsCrystal structureNeuronal self-avoidanceProtein interaction specificity

Identifiers

PMID28743640
PMCPMC5582985

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.