Evidence map›Paper›PMID 28743002›Full record

ArticleDevelopmental cell2017

Drosophila Histone Demethylase KDM4A Has Enzymatic and Non-enzymatic Roles in Controlling Heterochromatin Integrity.

Serafin U Colmenares, Joel M Swenson, Sasha A Langley, Cameron Kennedy, Sylvain V Costes, Gary H Karpen

Open access · bronzeAbstract read
In one paragraph

Article in Developmental cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Histone demethylases in autophagy and inflammation.Cell communication and signaling : CCS · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Multi-scale dynamics of heterochromatin repair.Current opinion in genetics & development · 2021
    Review
  17. Review
  18. Mechanistic insights into KDM4A driven genomic instability.Biochemical Society transactions · 2021
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Serafin U ColmenaresBiological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA. Electronic address: sucolmenares@lbl.gov.
Joel M SwensonBiological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; Department of Molecular and Cellular Biology, University of California, Berkeley, CA 94720, USA.
Sasha A LangleyBiological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Cameron KennedyBiological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Sylvain V CostesBiological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Gary H KarpenBiological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; Department of Molecular and Cellular Biology, University of California, Berkeley, CA 94720, USA.
Lawrence Berkeley National Laboratory · USUniversity of California, Berkeley · US

Funding

Organization and Function of the Heterochromatin Holodomain and SubdomainsR01GM117420 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI KARPEN, GARY H · 2016 to 2019
$2.5M
Regulation of DNA Damage and Repair in HeterochromatinR01GM086613 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI KARPEN, GARY H · 2011 to 2014
$1.6M
Regulation of Gene Activity and Chromatin Structure in Drosophila HeterochromatinF32GM086111 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI COLMENARES, SERAFIN URO · 2008 to 2010
$149k
NIGMS NIH HHS F32 GM086111NIGMS NIH HHS R01 GM086613NIGMS NIH HHS R01 GM117420
6 · The paper itself

Abstract

Eukaryotic genomes are broadly divided between gene-rich euchromatin and the highly repetitive heterochromatin domain, which is enriched for proteins critical for genome stability and transcriptional silencing. This study shows that Drosophila KDM4A (dKDM4A), previously characterized as a euchromatic histone H3 K36 demethylase and transcriptional regulator, predominantly localizes to heterochromatin and regulates heterochromatin position-effect variegation (PEV), organization of repetitive DNAs, and DNA repair. We demonstrate that dKDM4A demethylase activity is dispensable for PEV. In contrast, dKDM4A enzymatic activity is required to relocate heterochromatic double-strand breaks outside the domain, as well as for organismal survival when DNA repair is compromised. Finally, DNA damage triggers dKDM4A-dependent changes in the levels of H3K56me3, suggesting that dKDM4A demethylates this heterochromatic mark to facilitate repair. We conclude that dKDM4A, in addition to its previously characterized role in euchromatin, utilizes both enzymatic and structural mechanisms to regulate heterochromatin organization and functions.

Indexed as

AnimalsBiocatalysisCell CycleCell Cycle CheckpointsChromosomal Position EffectsDNA Breaks, Double-StrandedDNA RepairDrosophila melanogasterDrosophila ProteinsFertilityGene Expression RegulationGene SilencingHeterochromatinHistone DemethylasesHistonesLysineDrosophila ProteinsHeterochromatinHistone DemethylasesHistonesKDM4A protein, DrosophilaLysinedKDM4ADNA repairDrosophilaH3K36me3H3K56me3heterochromatinhistone demethylaseHP1aposition-effect variegationγH2Av

Identifiers

PMID28743002
PMCPMC5572651
OpenAlexW2737376299

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.