Evidence map›Paper›PMID 28742085›Full record

ArticlePLoS genetics2017

Clinically severe CACNA1A alleles affect synaptic function and neurodegeneration differentially.

Xi Luo, Jill A Rosenfeld, Shinya Yamamoto, Tamar Harel, Zhongyuan Zuo, Melissa Hall, Klaas J Wierenga, Matthew T Pastore, Dennis Bartholomew, Mauricio R Delgado and 15 more

Registry-linked trialOpen access · goldAbstract readCase Reports
In one paragraph

Article in PLoS genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02450851 (Clinical and Genetic Evaluation of Patients With Undiagnosed Disorders Through the Undiagnosed Diseases Network), which is not on this map. Cited by 58 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed, 1 pooled it
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02450851 recruitingnot on this map

Clinical and Genetic Evaluation of Patients With Undiagnosed Disorders Through the Undiagnosed Diseases Network

TypeobservationalSponsorNational Human Genome Research Institute (NHGRI)Ran2015 to 2028Enrolled20,000ConditionsGenetic Disease
3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 1 synthesis or guideline pooled it, 89 citations in OpenAlex.

  1. Pooled it
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  3. Review
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  6. Article
  7. Loss-of-function in RBBP5 results in a syndromic neurodevelopmental disorder associated with microcephaly.Genetics in medicine : official journal of the American College of Medical Genetics · 2024
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  15. The genotype-phenotype correlations of theFrontiers in molecular neuroscience · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 5 institutions in 1 country.

Xi LuoDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, United States of America.
Jill A RosenfeldDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, United States of America.ORCID http://orcid.org/0000-0001-5664-7987
Shinya YamamotoDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, United States of America.ORCID http://orcid.org/0000-0003-2172-8036
Tamar HarelDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, United States of America.
Zhongyuan ZuoDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, United States of America.
Melissa HallUniversity of Oklahoma Health Sciences Center, Oklahoma City, OK, United States of America.
Klaas J WierengaUniversity of Oklahoma Health Sciences Center, Oklahoma City, OK, United States of America.
Matthew T PastoreNationwide Children's Hospital & The Ohio State University, Columbus, OH, United States of America.ORCID http://orcid.org/0000-0001-9888-0779
Dennis BartholomewNationwide Children's Hospital & The Ohio State University, Columbus, OH, United States of America.
Mauricio R DelgadoDepartment of Neurology and Neurotherapeutics, UT Southwestern Medical Center andTexas Scottish Rite Hospital, Dallas, TX, United States of America.
Joshua RotenbergHouston Specialty Clinic, Houston, TX, United States of America.
Richard Alan LewisDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, United States of America.ORCID http://orcid.org/0000-0002-6644-6385
Lisa EmrickDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, United States of America.
Carlos A BacinoDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, United States of America.
Mohammad K EldomeryDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, United States of America.
Zeynep Coban AkdemirDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, United States of America.ORCID http://orcid.org/0000-0001-9928-9032
Fan XiaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, United States of America.
Yaping YangDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, United States of America.
Seema R LalaniDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, United States of America.
Timothy LotzeDepartment of Pediatrics, Baylor College of Medicine, Houston, TX, United States of America.
James R LupskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, United States of America.
Brendan LeeDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, United States of America.ORCID http://orcid.org/0000-0001-8573-4211
Hugo J BellenDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, United States of America.
Michael F WanglerDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, United States of America.ORCID http://orcid.org/0000-0001-5245-5910
Members of the UDN
Baylor College of Medicine · USNationwide Children's Hospital · USUniversity of Oklahoma Health Sciences Center · USHoward Hughes Medical Institute · USScottish Rite Hospital · US

Funding

Transposon induced disruption of most Drosophila genesR01GM067858 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI BELLEN, HUGO J · 2003 to 2020
$15.7M
Baylor-Johns Hopkins Center for Mendelian GeneticsUM1HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2016 to 2020
$14.5M
Pilot of New Technologies to Increase the Genomic Diagnosis of Undiagnosed Disease Network (UDN) PatientsU01HG007709 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI BACINO, CARLOS A., LEE, BRENDAN · 2014 to 2022
$14.3M
MEDICAL GENETICS RESEARCH FELLOWSHIP PROGRAMT32GM007526 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI Brendan Lee · 1985 to 2026
$11.4M
Steps towards a paternal gene activation therapy for Angelman syndromeU54HD083092 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI BEAUDET, ARTHUR L., NELSON, DAVID LOREN · 2014 to 2019
$7.8M
Zebrafish CoreU54NS093793 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI BELLEN, HUGO J · 2015 to 2022
$7.5M
Expansion and characterization of the Drosophila Toolkit to study SARS-CoV-2R24OD022005 · OD · BAYLOR COLLEGE OF MEDICINE · PI BELLEN, HUGO J · 2016 to 2023
$7.4M
Genomic medicine and gene function implementation for an underserved populationR01HG011795 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI BELLEN, HUGO J, WANGLER, MICHAEL FRANCIS · 2021 to 2025
$4.8M
Clinical Genome Wide Sequencing Core for the Undiagnosed Disease NetworkU01HG007943 · NHGRI · MEDICAL COLLEGE OF WISCONSIN · PI WORTHEY, ELIZABETH A · 2014 to 2017
$4.1M
NHGRI NIH HHS R01 HG011795NHGRI NIH HHS U01 HG007709NHGRI NIH HHS U01 HG007943NHGRI NIH HHS UM1 HG006542NICHD NIH HHS U54 HD083092NIGMS NIH HHS R01 GM067858NIGMS NIH HHS T32 GM007526NIH HHS R24 OD022005NINDS NIH HHS U54 NS093793
6 · The paper itself

Abstract

Dominant mutations in CACNA1A, encoding the α-1A subunit of the neuronal P/Q type voltage-dependent Ca2+ channel, can cause diverse neurological phenotypes. Rare cases of markedly severe early onset developmental delay and congenital ataxia can be due to de novo CACNA1A missense alleles, with variants affecting the S4 transmembrane segments of the channel, some of which are reported to be loss-of-function. Exome sequencing in five individuals with severe early onset ataxia identified one novel variant (p.R1673P), in a girl with global developmental delay and progressive cerebellar atrophy, and a recurrent, de novo p.R1664Q variant, in four individuals with global developmental delay, hypotonia, and ophthalmologic abnormalities. Given the severity of these phenotypes we explored their functional impact in Drosophila. We previously generated null and partial loss-of-function alleles of cac, the homolog of CACNA1A in Drosophila. Here, we created transgenic wild type and mutant genomic rescue constructs with the two noted conserved point mutations. The p.R1673P mutant failed to rescue cac lethality, displayed a gain-of-function phenotype in electroretinograms (ERG) recorded from mutant clones, and evolved a neurodegenerative phenotype in aging flies, based on ERGs and transmission electron microscopy. In contrast, the p.R1664Q variant exhibited loss of function and failed to develop a neurodegenerative phenotype. Hence, the novel R1673P allele produces neurodegenerative phenotypes in flies and human, likely due to a toxic gain of function.

Indexed as

AllelesGenome, HumanAnimalsAnimals, Genetically ModifiedCalcium ChannelsCalcium Channels, N-TypeCerebellar AtaxiaChildChild, PreschoolDrosophila melanogasterFemaleGenome-Wide Association StudyHumansMaleMicroscopy, Electron, TransmissionMutation, MissenseCACNA1A protein, humanCalcium ChannelsCalcium Channels, N-Type

Identifiers

PMID28742085
PMCPMC5557584
OpenAlexW2738297006

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.