ArticleBotanical studies2017
Transcriptomic analyses reveal clathrin-mediated endocytosis involved in symbiotic seed germination of Gastrodia elata.
Article in Botanical studies, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed, 33 citations in OpenAlex.
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- Mycorrhizal symbiosis between Coprinellus disseminatus and Cremastra appendiculata, insights from gene expression.Scientific reports · 2025Article
- An enhanced gene function analysis platform for Gastrodia Elata integrating further omics data and analysis tools.BMC plant biology · 2025Article
- Integrated transcriptome and metabolome provide insight into phenolics and soluble sugar variation in the different varieties ofFrontiers in plant science · 2025Article
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- Comparative Transcriptome Analysis Provides Insights into the Molecular Mechanism Underlying the Effect of MeJA Treatment on the Biosynthesis of Saikosaponins inLife (Basel, Switzerland) · 2023Article
- The role of symbiotic fungi in the life cycle ofFrontiers in plant science · 2023Review
- An exploration of mechanism of high quality and yield ofFrontiers in microbiology · 2023Article
- Chromosome-level genome assembly of the fully mycoheterotrophic orchid Gastrodia elata.G3 (Bethesda, Md.) · 2022Article
- Biochemical and transcriptomic analyses of the symbiotic interaction between Cremastra appendiculata and the mycorrhizal fungus Coprinellus disseminatus.BMC plant biology · 2022Article
- Regulatory network of ginsenoside biosynthesis under Ro stress in the hairy roots ofFrontiers in bioengineering and biotechnology · 2022Article
- Transcriptome Reveals Roles of Lignin-Modifying Enzymes and Abscisic Acid in the Symbiosis ofInternational journal of molecular sciences · 2021Article
- Evolutionary histories and mycorrhizal associations of mycoheterotrophic plants dependent on saprotrophic fungi.Journal of plant research · 2021Article
- The Genomic Impact of Mycoheterotrophy in Orchids.Frontiers in plant science · 2021Article
- Detailed Genetic Analysis for Identifying QTLs Associated with Drought Tolerance at Seed Germination and Seedling Stages in Barley.Plants (Basel, Switzerland) · 2020Article
- Ultrastructural changes during the symbiotic seed germination of Gastrodia elata with fungi, with emphasis on the fungal colonization region.Botanical studies · 2020Article
- Root-Associated Fungal Communities in Two Populations of the Fully Mycoheterotrophic PlantMicroorganisms · 2019Article
- Development of EST-based SSR and SNP markers in3 Biotech · 2019Article
Corrections and comments
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Authors and funding
7 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundGastrodia elata is a well-known medicinal orchid. In nature, the germination rate of G. elata is extremely poor, because there is no endosperm within the mature seed. It is crucial for G. elata to obtain nutrition from mycorrhizal fungi (Mycena) at the early-stage of germination. After germination, the seed gives rise to a protocorm. However, there are no "omic" studies on understanding the interaction between Gastrodia and Mycena. Here, we used transcriptomic approaches to explore changes in seed germination of G. elata.
resultsBased on RNA-Seq, a total of ~221 million clean reads were assembled denovo into 139,756 unigenes, including 42,140 unigenes that were annotated in public databases. Meanwhile, 1750 unigenes were identified as differentially expressed genes. Most of these differentially expressed genes were putatively involved in energy metabolism, plant defense, molecular signaling, and secondary metabolism. Additionally, numerous genes involved in clathrin-mediated endocytosis were identified from our data. Most of these genes (e.g., clathrin, adaptor protein, dynamin, HSC70) were basally expressed in seeds and highly expressed in protocorms.
conclusionsOur data suggested that clathrin-mediated endocytosis could play important roles in symbiotic seed germination of G. elata with Mycena infections.
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