Evidence map›Paper›PMID 28740039›Full record

ArticleMicrobes and environments2017

Isolation of Novel Bacteria Including Rarely Cultivated Phyla, Acidobacteria and Verrucomicrobia, from the Roots of Emergent Plants by Simple Culturing Method.

Yasuhiro Tanaka, Hiroaki Matsuzawa, Hideyuki Tamaki, Masahiro Tagawa, Tadashi Toyama, Yoichi Kamagata, Kazuhiro Mori

Abstract read
In one paragraph

Article in Microbes and environments, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
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  5. Buffer-free CAS assay using a diluted growth medium efficiently detects siderophore production and microbial growth.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2024
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  6. Article
  7. Integrative medicine research · 2023
    Article
  8. Article
  9. Article
  10. Complete Genome Sequence ofMicrobiology resource announcements · 2022
    Article
  11. The Isolation of Culturable Bacteria inInternational journal of environmental research and public health · 2021
    Article
  12. Novel Plant-AssociatedMicroorganisms · 2021
    Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yasuhiro TanakaDepartment of Environmental Sciences, Faculty of Life and Environmental Sciences, University of Yamanashi.
Hiroaki MatsuzawaInternational Research Centre for River Basin Environment, University of Yamanashi.
Hideyuki TamakiBioproduction Research Institute, AIST.
Masahiro TagawaBioproduction Research Institute, AIST.
Tadashi ToyamaDepartment of Civil and Environmental Engineering, Faculty of Engineering, University of Yamanashi.
Yoichi KamagataBioproduction Research Institute, AIST.
Kazuhiro MoriDepartment of Civil and Environmental Engineering, Faculty of Engineering, University of Yamanashi.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A number of novel bacteria including members of rarely cultivated phyla, Acidobacteria and Verrucomicrobia, were successfully isolated from the roots of two emergent plants, Iris pseudacorus and Scirpus juncoides, by a simple culturing method. A total of 47.1% (66 strains) for I. pseudacorus and 42.1% (59 strains) for S. juncoides of all isolates (140 strains from each sample) were phylogenetically novel. Furthermore, Acidobacteria and Verrucomicrobia occupied 10.7% (15 strains) and 2.9% (4 strains) of I. pseudacorus isolates, and 2.1% (3 strains) and 3.6% (5 strains) of S. juncoides isolates, respectively, indicating that plant roots are attractive sources for isolating rarely cultivated microbes.

Indexed as

Soil MicrobiologyAcidobacteriaBacteriological TechniquesCyperaceaeIris PlantPhylogenyPlant RootsVerrucomicrobiaAcidobacteriaemergent plantmicrobial communityVerrucomicrobia

Identifiers

PMID28740039
PMCPMC5606700

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.