Evidence map›Paper›PMID 28738838›Full record

ArticleBMC microbiology2017

Improved detection of genus-specific Alphavirus using a generic TaqMan® assay.

Claude Giry, Bénédicte Roquebert, Ghislaine Li-Pat-Yuen, Philippe Gasque, Marie-Christine Jaffar-Bandjee

Open access · goldAbstract readEvaluation Study
In one paragraph

Article in BMC microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

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  4. Excellent capability for molecular detection ofJournal of clinical microbiology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Claude GiryCentre National Arbovirus Associé, CHU de la Réunion-Site Nord, Saint-Denis, La Réunion, France. claude.giry@chu-reunion.fr.ORCID http://orcid.org/0000-0002-4286-0063
Bénédicte RoquebertCentre National Arbovirus Associé, CHU de la Réunion-Site Nord, Saint-Denis, La Réunion, France.
Ghislaine Li-Pat-YuenCentre National Arbovirus Associé, CHU de la Réunion-Site Nord, Saint-Denis, La Réunion, France.
Philippe GasqueLaboratoire d'immunologie clinique et expérimentale ZOI (LICE-OI), CHU de la Réunion-Site Nord, Saint-Denis, La Réunion, France.
Marie-Christine Jaffar-BandjeeCentre National Arbovirus Associé, CHU de la Réunion-Site Nord, Saint-Denis, La Réunion, France.
University of Reunion Island · RECentre Hospitalier Universitaire de La Réunion · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAlphaviruses are arthropod borne RNA viruses of medical importance. Geographical expansion of mosquitoes of the Aedes genus in the past decades has been associated with major Alphavirus-associated outbreaks. Climate changes and intensification of air travels have favored vector expansion and virus dissemination in new territories leading to virus emergence not only in tropical areas but also in temperate regions. The detection of emergence is based upon surveillance networks with epidemiological and laboratory investigation.

methodA specific, sensitive and rapid screening test for genus-specific Alphavirus is critically required. To address this issue, we developed a new molecular assay targeting nsP4 gene and using a TaqMan® real time RT-PCR method for the specific detection of all major Alphavirus genus members.

resultsThis assay was tested for specificity using several Alphavirus species. We also tested successfully clinical sensitivity using patient's samples collected during the Chikungunya outbreak of 2005-2006 in the Indian Ocean.

conclusionsThis new pan-Alphavirus molecular diagnostic tool offers great potential for exclusion diagnosis and emergence detection given its broad specificity restricted to Alphavirus genus.

Indexed as

AlphavirusAlphavirus InfectionsDNA PrimersHumansReal-Time Polymerase Chain ReactionRNA, ViralDNA PrimersRNA, ViralAlphavirusMolecular diagnosisVirus emergence

Identifiers

PMID28738838
PMCPMC5525299
OpenAlexW2739183564

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.