Evidence map›Paper›PMID 28737669›Full record

ArticleMolecules (Basel, Switzerland)2017

Molecular Dynamics Simulations of the Host Defense Peptide Temporin L and Its Q3K Derivative: An Atomic Level View from Aggregation in Water to Bilayer Perturbation.

Andrea Farrotti, Paolo Conflitti, Saurabh Srivastava, Jimut Kanti Ghosh, Antonio Palleschi, Lorenzo Stella, Gianfranco Bocchinfuso

Abstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Computational and structural biotechnology journal · 2022
    Review
  5. Review
  6. Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Andrea FarrottiDipartimento di Scienze e Tecnologie Chimiche, Università di Roma "Tor Vergata", Rome 00133, Italy. farrox86@gmail.com.
Paolo ConflittiDipartimento di Scienze e Tecnologie Chimiche, Università di Roma "Tor Vergata", Rome 00133, Italy. paolo.conflitti@gmail.com.
Saurabh SrivastavaMolecular and Structural Biology Division, CSIR-Central Drug Research Institute, Sector 10, Jankipuram Extension, Sitapur Road, Lucknow 226031, India. thesaurabhsrivastava@yahoo.co.in.
Jimut Kanti GhoshMolecular and Structural Biology Division, CSIR-Central Drug Research Institute, Sector 10, Jankipuram Extension, Sitapur Road, Lucknow 226031, India. jk_ghosh@cdri.res.in.
Antonio PalleschiDipartimento di Scienze e Tecnologie Chimiche, Università di Roma "Tor Vergata", Rome 00133, Italy. antonio.palleschi@uniroma2.it.
Lorenzo StellaDipartimento di Scienze e Tecnologie Chimiche, Università di Roma "Tor Vergata", Rome 00133, Italy. stella@stc.uniroma2.it.
Gianfranco BocchinfusoDipartimento di Scienze e Tecnologie Chimiche, Università di Roma "Tor Vergata", Rome 00133, Italy. gianfranco.bocchinfuso@uniroma2.it.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Temporin L (TempL) is a 13 residue Host Defense Peptide (HDP) isolated from the skin of frogs. It has a strong affinity for lipopolysaccharides (LPS), which is related to its high activity against Gram-negative bacteria and also to its strong tendency to neutralize the pro-inflammatory response caused by LPS release from inactivated bacteria. A designed analog with the Q3K substitution shows an enhancement in both these activities. In the present paper, Molecular Dynamics (MD) simulations have been used to investigate the origin of these improved properties. To this end, we have studied the behavior of the peptides both in water solution and in the presence of LPS lipid-A bilayers, demonstrating that the main effect through which the Q3K substitution improves the peptide activities is the destabilization of peptide aggregates in water.

Indexed as

Molecular Dynamics SimulationAntimicrobial Cationic PeptidesLipid BilayersLipopolysaccharidesPeptidesProteinsWaterAntimicrobial Cationic PeptidesLipid BilayersLipopolysaccharidesPeptidesProteinstemporinWaterLPSmolecular dynamics simulationspeptide aggregationPotential of Mean Force (PMF)Temporin

Identifiers

PMID28737669
PMCPMC6152314

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.