Evidence map›Paper›PMID 28737471›Full record

ArticleRNA biology2018

Quality control by trans-editing factor prevents global mistranslation of non-protein amino acid α-aminobutyrate.

Jo Marie Bacusmo, Alexandra B Kuzmishin, William A Cantara, Yuki Goto, Hiroaki Suga, Karin Musier-Forsyth

Open access · bronzeAbstract read
In one paragraph

Article in RNA biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Frontiers in microbiology · 2024
    Article
  5. Review
  6. Article
  7. Upgrading aminoacyl-tRNA synthetases for genetic code expansion.Current opinion in chemical biology · 2018
    Review
  8. Article
  9. Article
  10. Fluorothreonyl-tRNA deacylase prevents mistranslation in the organofluorine producerProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Jo Marie Bacusmoa Department of Chemistry and Biochemistry , The Ohio State University , Columbus , OH , USA.ORCID 0000-0003-1021-1824
Alexandra B Kuzmishina Department of Chemistry and Biochemistry , The Ohio State University , Columbus , OH , USA.
William A Cantaraa Department of Chemistry and Biochemistry , The Ohio State University , Columbus , OH , USA.
Yuki Gotoc Department of Chemistry , Graduate School of Science, The University of Tokyo , Bunkyo , Tokyo , Japan.
Hiroaki Sugac Department of Chemistry , Graduate School of Science, The University of Tokyo , Bunkyo , Tokyo , Japan.
Karin Musier-Forsytha Department of Chemistry and Biochemistry , The Ohio State University , Columbus , OH , USA.
The Ohio State University · USThe University of Tokyo · JP

Funding

CHEMISTRY/BIOLOGY TRAINING GRANTT32GM008512 · NIGMS · OHIO STATE UNIVERSITY · PI PEI, DEHUA · 1996 to 2016
$3.9M
Translational quality control by trans-editing domainsR01GM113656 · NIGMS · OHIO STATE UNIVERSITY · PI MUSIER-FORSYTH, KARIN M · 2015 to 2018
$1.1M
NIGMS NIH HHS R01 GM113656NIGMS NIH HHS T32 GM008512
6 · The paper itself

Abstract

Accuracy in protein biosynthesis is maintained through multiple pathways, with a critical checkpoint occurring at the tRNA aminoacylation step catalyzed by aminoacyl-tRNA synthetases (ARSs). In addition to the editing functions inherent to some synthetases, single-domain trans-editing factors, which are structurally homologous to ARS editing domains, have evolved as alternative mechanisms to correct mistakes in aminoacyl-tRNA synthesis. To date, ARS-like trans-editing domains have been shown to act on specific tRNAs that are mischarged with genetically encoded amino acids. However, structurally related non-protein amino acids are ubiquitous in cells and threaten the proteome. Here, we show that a previously uncharacterized homolog of the bacterial prolyl-tRNA synthetase (ProRS) editing domain edits a known ProRS aminoacylation error, Ala-tRNA

Indexed as

RNA Processing, Post-TranscriptionalTransfer RNA AminoacylationAlanineAmino Acyl-tRNA SynthetasesAminobutyratesAnticodonBinding SitesCodonEscherichia coliKineticsMolecular Docking SimulationMutationNucleic Acid ConformationProlineProtein BindingProtein Interaction Domains and MotifsAlaninealpha-aminobutyric acidAmino Acyl-tRNA SynthetasesAminobutyratesAnticodonCodonProlineprolyl T RNA synthetaseRNA, Transfer, ProAminoacyl-trna synthetasesProRSRhodopseudomonas palustristrans-editing

Identifiers

PMID28737471
PMCPMC6103672
OpenAlexW2737642127

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.