Evidence map›Paper›PMID 28736893›Full record

ArticleJournal of computational chemistry2017

Benchmarking density functional tight binding models for barrier heights and reaction energetics of organic molecules.

Maja Gruden, Ljubica Andjeklović, Akkarapattiakal Kuriappan Jissy, Stepan Stepanović, Matija Zlatar, Qiang Cui, Marcus Elstner

Abstract read
In one paragraph

Article in Journal of computational chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. CHIPS-TB: Evaluating Tight-Binding Models for Metals, Semiconductors, and Insulators.The journal of physical chemistry. C, Nanomaterials and interfaces · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Maja GrudenCenter for Computational Chemistry and Bioinformatics, Faculty of Chemistry, University of Belgrade, Studentski Trg 12-16, Belgrade, 11001, Serbia.ORCID 0000-0002-0746-5754
Ljubica AndjeklovićDepartment of Chemistry, IChTM, University of Belgrade, Studentski Trg 12-16, 11001, Belgrade, Serbia.
Akkarapattiakal Kuriappan JissyInstitute of Physical Chemistry & Institute of Biological Interfaces (IBG-2), Karlsruhe Institute of Technology, Kaiserstr. 12, Karlsruhe, 76131, Germany.
Stepan StepanovićDepartment of Chemistry, IChTM, University of Belgrade, Studentski Trg 12-16, 11001, Belgrade, Serbia.
Matija ZlatarDepartment of Chemistry, IChTM, University of Belgrade, Studentski Trg 12-16, 11001, Belgrade, Serbia.
Qiang CuiDepartment of Chemistry, University of Wisconsin - Madison, Madison, Wisconsin.ORCID 0000-0001-6214-5211
Marcus ElstnerInstitute of Physical Chemistry & Institute of Biological Interfaces (IBG-2), Karlsruhe Institute of Technology, Kaiserstr. 12, Karlsruhe, 76131, Germany.

Funding

Development and application of QM/MM methods for metalloenzymesR01GM106443 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI CUI, QIANG · 2013 to 2020
$2.3M
NIGMS NIH HHS R01 GM106443
6 · The paper itself

Abstract

Density Functional Tight Binding (DFTB) models are two to three orders of magnitude faster than ab initio and Density Functional Theory (DFT) methods and therefore are particularly attractive in applications to large molecules and condensed phase systems. To establish the applicability of DFTB models to general chemical reactions, we conduct benchmark calculations for barrier heights and reaction energetics of organic molecules using existing databases and several new ones compiled in this study. Structures for the transition states and stable species have been fully optimized at the DFTB level, making it possible to characterize the reliability of DFTB models in a more thorough fashion compared to conducting single point energy calculations as done in previous benchmark studies. The encouraging results for the diverse sets of reactions studied here suggest that DFTB models, especially the most recent third-order version (DFTB3/3OB augmented with dispersion correction), in most cases provide satisfactory description of organic chemical reactions with accuracy almost comparable to popular DFT methods with large basis sets, although larger errors are also seen for certain cases. Therefore, DFTB models can be effective for mechanistic analysis (e.g., transition state search) of large (bio)molecules, especially when coupled with single point energy calculations at higher levels of theory. © 2017 Wiley Periodicals, Inc.

Indexed as

barrier heightsDFTBreaction energiestransition state optimization

Identifiers

PMID28736893
PMCPMC5554453

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.