Evidence map›Paper›PMID 28733648›Full record

ArticleNature communications2017

Modulation of polypeptide conformation through donor-acceptor transformation of side-chain hydrogen bonding ligands.

Ziyuan Song, Rachael A Mansbach, Hua He, Kuo-Chih Shih, Ryan Baumgartner, Nan Zheng, Xiaochu Ba, Yinzhao Huang, Deepak Mani, Yun Liu and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
  2. Article
  3. Chemical science · 2024
    Article
  4. Article
  5. Engineering Precision Medicine.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2019
    Review
  6. Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 3 countries.

Ziyuan SongDepartment of Materials Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois, 61801, USA.
Rachael A MansbachDepartment of Physics, University of Illinois at Urbana-Champaign, Urbana, Illinois, 61801, USA.ORCID http://orcid.org/0000-0002-6738-1261
Hua HeJiangsu Key Laboratory for Carbon-Based Functional Materials & Devices, Institute of Functional Nano & Soft Materials (FUNSOM), Soochow University, Suzhou, 215123, China.
Kuo-Chih ShihPolymer Program, Institute of Materials Science, University of Connecticut, Storrs, Connecticut, 06269, USA.ORCID http://orcid.org/0000-0003-2938-993X
Ryan BaumgartnerDepartment of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois, 61801, USA.
Nan ZhengDepartment of Materials Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois, 61801, USA.
Xiaochu BaDepartment of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois, 61801, USA.
Yinzhao HuangDepartment of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois, 61801, USA.
Deepak ManiDepartment of Materials Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois, 61801, USA.
Yun LiuCenter for Neutron Research, National Institute of Standards and Technology, Gaithersburg, Maryland, 20899, USA.
Yao LinPolymer Program, Institute of Materials Science, University of Connecticut, Storrs, Connecticut, 06269, USA.ORCID http://orcid.org/0000-0001-5227-2663
Mu-Ping NiehPolymer Program, Institute of Materials Science, University of Connecticut, Storrs, Connecticut, 06269, USA.
Andrew L FergusonDepartment of Materials Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois, 61801, USA. alf@illinois.edu.ORCID http://orcid.org/0000-0002-8829-9726
Lichen YinJiangsu Key Laboratory for Carbon-Based Functional Materials & Devices, Institute of Functional Nano & Soft Materials (FUNSOM), Soochow University, Suzhou, 215123, China. lcyin@suda.edu.cn.
Jianjun ChengDepartment of Materials Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois, 61801, USA. jianjunc@illinois.edu.
University of Illinois Urbana-Champaign · USUniversity of Connecticut · USSoochow University · CNNational Institute of Standards and Technology · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Synthetic polypeptides have received increasing attention due to their ability to form higher ordered structures similar to proteins. The control over their secondary structures, which enables dynamic conformational changes, is primarily accomplished by tuning the side-chain hydrophobic or ionic interactions. Herein we report a strategy to modulate the conformation of polypeptides utilizing donor-acceptor interactions emanating from side-chain H-bonding ligands. Specifically, 1,2,3-triazole groups, when incorporated onto polypeptide side-chains, serve as both H-bond donors and acceptors at neutral pH and disrupt the α-helical conformation. When protonated, the resulting 1,2,3-triazolium ions lose the ability to act as H-bond acceptors, and the polypeptides regain their α-helical structure. The conformational change of triazole polypeptides in response to the donor-acceptor pattern was conclusively demonstrated using both experimental-based and simulation-based methods. We further showed the utility of this transition by designing smart, cell-penetrating polymers that undergo acid-activated endosomal escape in living cells.Hydrogen bonding plays a major role in determining the tridimensional structure of biopolymers. Here, the authors show that control over a polypeptide conformation can be achieved by altering the donor-acceptor properties of side-chain triazole units via protonation-deprotonation.

Indexed as

Hydrogen BondingLigandsProtein Conformation, alpha-HelicalProtein Structure, SecondaryAnimalsBiopolymersHeLa CellsHumansHydrogen-Ion ConcentrationMiceMicroscopy, ConfocalModels, MolecularNIH 3T3 CellsPeptidesProtein ConformationSpectrum AnalysisBiopolymersLigandsPeptidesTriazoles

Identifiers

PMID28733648
PMCPMC5522480
OpenAlexW2734385519

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.