Evidence map›Paper›PMID 28731711›Full record

ArticleJournal of proteome research2017

Identification of Proteomic Features To Distinguish Benign Pulmonary Nodules from Lung Adenocarcinoma.

Simona G Codreanu, Megan D Hoeksema, Robbert J C Slebos, Lisa J Zimmerman, S M Jamshedur Rahman, Ming Li, Sheau-Chiann Chen, Heidi Chen, Rosana Eisenberg, Daniel C Liebler and 1 more

Abstract read
In one paragraph

Article in Journal of proteome research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it, 71 citations in OpenAlex.

  1. Prognostic role of CRABP2 in lung cancer: a meta-analysis.Journal of cardiothoracic surgery · 2024
    Pooled it
  2. Article
  3. Article
  4. A Novel Theranostic Strategy for Malignant Pulmonary Nodules by Targeted CECAM6 withAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Simona G CodreanuDepartment of Biochemistry, Vanderbilt University Medical Center , Nashville, Tennessee 37232, United States.
Megan D Hoeksema
Robbert J C SlebosDepartment of Biochemistry, Vanderbilt University Medical Center , Nashville, Tennessee 37232, United States.
Lisa J ZimmermanDepartment of Biochemistry, Vanderbilt University Medical Center , Nashville, Tennessee 37232, United States.
S M Jamshedur Rahman
Ming LiDepartment of Biostatistics, Vanderbilt University Medical Center , Nashville, Tennessee 37232, United States.
Sheau-Chiann ChenCenter for Quantitative Sciences, Vanderbilt University Medical Center , Nashville, Tennessee 37232, United States.
Heidi ChenDepartment of Biostatistics, Vanderbilt University Medical Center , Nashville, Tennessee 37232, United States.
Rosana EisenbergDepartment of Pathology, Microbiology and Immunology, Vanderbilt University Medical Center , Nashville, Tennessee 37232, United States.
Daniel C LieblerDepartment of Biochemistry, Vanderbilt University Medical Center , Nashville, Tennessee 37232, United States.ORCID 0000-0002-7873-3031
Pierre P MassionDepartment of Cancer Biology, Vanderbilt University Medical Center , Nashville, Tennessee 37232, United States.ORCID 0000-0003-0647-0559
Vanderbilt University Medical Center · USVA Tennessee Valley Healthcare System · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
TARGETING NOTCH 3 IN LUNG CANCERP50CA090949 · NCI · VANDERBILT UNIVERSITY · PI MASSION, PIERRE P. · 2001 to 2011
$24.1M
Vanderbilt Mouse Metabolic Physiology CenterU24DK059637 · NIDDK · VANDERBILT UNIVERSITY · PI WASSERMAN, DAVID H · 2001 to 2015
$14.9M
Validation of Biomarkers of Risk for the Early Detection of Lung CancerU01CA152662 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI DEPPEN, STEPHEN, GROGAN, ERIC L · 2010 to 2025
$12.8M
Vanberbilt Biomarker Developmental LaboratoryU01CA152647 · NCI · VANDERBILT UNIVERSITY · PI LIEBLER, DANIEL C, TABB, DAVID L · 2010 to 2014
$3.1M
Molecular Approaches to Early Detection of Lung CancerR01CA102353 · NCI · VANDERBILT UNIVERSITY · PI MASSION, PIERRE P. · 2005 to 2014
$2.4M
NCI NIH HHS P30 CA068485NCI NIH HHS P50 CA090949NCI NIH HHS R01 CA102353NCI NIH HHS U01 CA152647NCI NIH HHS U01 CA152662NIDDK NIH HHS U24 DK059637
6 · The paper itself

Abstract

We hypothesized that distinct protein expression features of benign and malignant pulmonary nodules may reveal novel candidate biomarkers for the early detection of lung cancer. We performed proteome profiling by liquid chromatography-tandem mass spectrometry to characterize 34 resected benign lung nodules, 24 untreated lung adenocarcinomas (ADCs), and biopsies of bronchial epithelium. Group comparisons identified 65 proteins that differentiate nodules from ADCs and normal bronchial epithelium and 66 proteins that differentiate ADCs from nodules and normal bronchial epithelium. We developed a multiplexed parallel reaction monitoring (PRM) assay to quantify a subset of 43 of these candidate biomarkers in an independent cohort of 20 benign nodules, 21 ADCs, and 20 normal bronchial biopsies. PRM analyses confirmed significant nodule-specific abundance of 10 proteins including ALOX5, ALOX5AP, CCL19, CILP1, COL5A2, ITGB2, ITGAX, PTPRE, S100A12, and SLC2A3 and significant ADC-specific abundance of CEACAM6, CRABP2, LAD1, PLOD2, and TMEM110-MUSTN1. Immunohistochemistry analyses for seven selected proteins performed on an independent set of tissue microarrays confirmed nodule-specific expression of ALOX5, ALOX5AP, ITGAX, and SLC2A3 and cancer-specific expression of CEACAM6. These studies illustrate the value of global and targeted proteomics in a systematic process to identify and qualify candidate biomarkers for noninvasive molecular diagnosis of lung cancer.

Indexed as

Gene Expression Regulation, Neoplastic5-Lipoxygenase-Activating ProteinsAdenocarcinomaAdenocarcinoma of LungAdultAgedAntigens, CDArachidonate 5-LipoxygenaseBiomarkers, TumorCD11 AntigensCell Adhesion MoleculesDiagnosis, DifferentialFemaleGlucose Transporter Type 3GPI-Linked ProteinsHumans5-Lipoxygenase-Activating ProteinsALOX5AP protein, humanALOX5 protein, humanAntigens, CDArachidonate 5-LipoxygenaseBiomarkers, TumorCD11 AntigensCEACAM6 protein, humanCell Adhesion MoleculesGlucose Transporter Type 3GPI-Linked ProteinsIntegrin alpha ChainsITGAD protein, humanNeoplasm ProteinsSLC2A3 protein, humanadenocarcinomagranulomaindeterminate pulmonary nodulelung cancerparallel reaction monitoring

Identifiers

PMID28731711
PMCPMC6339813
OpenAlexW2737592678

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.