Evidence map›Paper›PMID 28731468›Full record

ArticleThe ISME journal2017

A role for the cell-wall protein silacidin in cell size of the diatom Thalassiosira pseudonana.

Amy R Kirkham, Patrick Richthammer, Katrin Schmidt, Martin Wustmann, Yoshiaki Maeda, René Hedrich, Eike Brunner, Tsuyoshi Tanaka, Karl-Heinz van Pée, Angela Falciatore and 1 more

Abstract read
In one paragraph

Article in The ISME journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Genetic engineering in diatoms: advances and prospects.The Plant journal : for cell and molecular biology · 2025
    Review
  5. The Art of Exploring Diatom Biosilica Biomaterials: From Biofabrication Perspective.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Review
  6. Article
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Amy R KirkhamSchool of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, UK.
Patrick RichthammerAllgemeine Biochemie, TU Dresden, Dresden, Germany.
Katrin SchmidtSchool of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, UK.
Martin WustmannAllgemeine Biochemie, TU Dresden, Dresden, Germany.
Yoshiaki MaedaTokyo University of Agriculture and Technology, Tokyo, Japan.
René HedrichAllgemeine Biochemie, TU Dresden, Dresden, Germany.
Eike BrunnerAllgemeine Biochemie, TU Dresden, Dresden, Germany.
Tsuyoshi TanakaTokyo University of Agriculture and Technology, Tokyo, Japan.
Karl-Heinz van PéeAllgemeine Biochemie, TU Dresden, Dresden, Germany.
Angela FalciatoreSorbonne Universités, UPMC, Institut de Biologie Paris-Seine, CNRS, Laboratoire de Biologie Computationnelle et Quantitative, Paris, France.
Thomas MockSchool of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, UK.ORCID 0000-0001-9604-0362

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Diatoms contribute 20% of global primary production and form the basis of many marine food webs. Although their species diversity correlates with broad diversity in cell size, there is also an intraspecific cell-size plasticity owing to sexual reproduction and varying environmental conditions. However, despite the ecological significance of the diatom cell size for food-web structure and global biogeochemical cycles, our knowledge about genes underpinning the size of diatom cells remains elusive. Here, a combination of reverse genetics, experimental evolution and comparative RNA-sequencing analyses enabled us to identify a previously unknown genetic control of cell size in the diatom Thalassiosira pseudonana. In particular, the targeted deregulation of the expression of the cell-wall protein silacidin caused a significant increase in valve diameter. Remarkably, the natural downregulation of the silacidin gene transcript due to experimental evolution under low temperature also correlated with cell-size increase. Our data give first evidence for a genetically controlled regulation of cell size in T. pseudonana and possibly other centric diatoms as they also encode the silacidin gene in their genomes.

Indexed as

Cell SizeCell WallDiatomsGene Expression RegulationGenomeProteinsProteins

Identifiers

PMID28731468
PMCPMC5649158

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.