Evidence map›Paper›PMID 28730525›Full record

ArticlePlant molecular biology2017

Identification of a seed coat-specific promoter fragment from the Arabidopsis MUCILAGE-MODIFIED4 gene.

Gillian H Dean, Zhaoqing Jin, Lin Shi, Elahe Esfandiari, Robert McGee, Kylie Nabata, Tiffany Lee, Ljerka Kunst, Tamara L Western, George W Haughn

Abstract read
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In one paragraph

Article in Plant molecular biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Gillian H DeanDepartment of Botany, University of British Columbia, 6270 University Blvd., Vancouver, BC, V6T 1Z4, Canada.
Zhaoqing JinDepartment of Botany, University of British Columbia, 6270 University Blvd., Vancouver, BC, V6T 1Z4, Canada.
Lin ShiDepartment of Botany, University of British Columbia, 6270 University Blvd., Vancouver, BC, V6T 1Z4, Canada.
Elahe EsfandiariDepartment of Botany, University of British Columbia, 6270 University Blvd., Vancouver, BC, V6T 1Z4, Canada.
Robert McGeeDepartment of Botany, University of British Columbia, 6270 University Blvd., Vancouver, BC, V6T 1Z4, Canada.
Kylie NabataDepartment of Botany, University of British Columbia, 6270 University Blvd., Vancouver, BC, V6T 1Z4, Canada.
Tiffany LeeDepartment of Botany, University of British Columbia, 6270 University Blvd., Vancouver, BC, V6T 1Z4, Canada.
Ljerka KunstDepartment of Botany, University of British Columbia, 6270 University Blvd., Vancouver, BC, V6T 1Z4, Canada.
Tamara L WesternDepartment of Biology, McGill University, 1205 Ave. Docteur Penfield, Montreal, QC, H3A 1B1, Canada.
George W HaughnDepartment of Botany, University of British Columbia, 6270 University Blvd., Vancouver, BC, V6T 1Z4, Canada. george.haughn@ubc.ca.
University of British Columbia · CAMcGill University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageThe Arabidopsis seed coat-specific promoter fragment described is an important tool for basic and applied research in Brassicaceae species. During differentiation, the epidermal cells of the Arabidopsis seed coat produce and secrete large quantities of mucilage. On hydration of mature seeds, this mucilage becomes easily accessible as it is extruded to form a tightly attached halo at the seed surface. Mucilage is composed mainly of pectin, and also contains the key cell wall components cellulose, hemicellulose, and proteins, making it a valuable model for studying numerous aspects of cell wall biology. Seed coat-specific promoters are an important tool that can be used to assess the effects of expressing biosynthetic enzymes and diverse cell wall-modifying proteins on mucilage structure and function. Additionally, they can be used for production of easily accessible recombinant proteins of commercial interest. The MUCILAGE-MODIFIED4 (MUM4) gene is expressed in a wide variety of plant tissues and is strongly up-regulated in the seed coat during mucilage synthesis, implying the presence of a seed coat-specific region in its promoter. Promoter deletion analysis facilitated isolation of a 308 base pair sequence (MUM4

Indexed as

Gene Expression Regulation, PlantPromoter Regions, Genetic5' Untranslated RegionsArabidopsisArabidopsis ProteinsComputer SimulationGene SilencingGenes, ReporterGenetic Complementation TestGlucuronidaseIntronsMultienzyme ComplexesOpen Reading FramesReal-Time Polymerase Chain ReactionSeedsSequence Deletion5' Untranslated RegionsArabidopsis ProteinsGlucuronidaseMultienzyme ComplexesMUM4 protein, ArabidopsisTranscription FactorsArabidopsisBrassicaMUCILAGE-MODIFIED4 (MUM4)Seed coat-specific promoter

Identifiers

PMID28730525
OpenAlexW2736754845

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.