Evidence map›Paper›PMID 28730448›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2017

Preparation of a Conditional RNA Switch.

Paul Zakrevsky, Lorena Parlea, Mathias Viard, Eckart Bindewald, Kirill A Afonin, Bruce A Shapiro

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Paul ZakrevskyRNA Structure and Design Section, RNA Biology Laboratory, National Cancer Institute, National Institutes of Health, Frederick, MD, 21702, USA.
Lorena ParleaRNA Structure and Design Section, RNA Biology Laboratory, National Cancer Institute, National Institutes of Health, Frederick, MD, 21702, USA.
Mathias ViardRNA Structure and Design Section, RNA Biology Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Frederick, MD, 21702, USA.
Eckart BindewaldFrederick National Laboratory for Cancer Research, Leidos Biomedical Research, Frederick, MD, USA.
Kirill A AfoninNanoscale Science Program, Department of Chemistry, University of North Carolina at Charlotte, Charlotte, NC, 28223, USA.
Bruce A ShapiroRNA Structure and Design Section, RNA Biology Laboratory, National Cancer Institute, National Institutes of Health, Frederick, MD, 21702, USA. shapirbr@mail.nih.gov.

Funding

COMPUTER ANALYSIS OF NUCLEIC ACID STRUCTUREZ01BC008382 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SHAPIRO, BRUCE A. · 1996 to 2008
$1.2M
Computational RNA NanodesignZ01BC011061 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SHAPIRO, BRUCE · 2008 to 2008
$513k
CCR NIH HHS HHSN261200800001CIntramural NIH HHS Z01 BC008382Intramural NIH HHS Z01 BC011061NCI NIH HHS HHSN261200800001E
6 · The paper itself

Abstract

RNA has gained great interest for use in biomedical and therapeutic applications. This is due in part to RNA's ability to perform multiple functions, including the regulation of endogenously expressed genes. However, the ability of RNA based drugs to distinguish target diseased cells from healthy tissue remains challenging. Here we present methods for the production of a recently developed conditional RNA switch that releases a Dicer substrate RNA in response to interaction with a specific RNA biomarker.

Indexed as

RiboswitchCell Line, TumorElectrophoresis, Polyacrylamide GelGene Knockdown TechniquesGene SilencingHumansNanomedicineNanotechnologyNucleic Acid ConformationRibonuclease HRNARibonuclease HRiboswitchRNAConditional RNANanomedicineNanotechnologyRNARNase HRNA switchToehold

Identifiers

PMID28730448
PMCPMC10802921

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.