Evidence map›Paper›PMID 28730434›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2017

Cotranscriptional Production of Chemically Modified RNA Nanoparticles.

Maria L Kireeva, Kirill A Afonin, Bruce A Shapiro, Mikhail Kashlev

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Maria L KireevaRNA Biology Laboratory, National Cancer Institute, National Institutes of Health, Frederick, MD, 21702, USA. kireevam@mail.nih.gov.
Kirill A AfoninRNA Biology Laboratory, National Cancer Institute, National Institutes of Health, Frederick, MD, 21702, USA.
Bruce A ShapiroRNA Biology Laboratory, National Cancer Institute, National Institutes of Health, Frederick, MD, 21702, USA.
Mikhail KashlevRNA Biology Laboratory, National Cancer Institute, National Institutes of Health, Frederick, MD, 21702, USA.

Funding

Computational RNA NanodesignZIABC011061 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SHAPIRO, BRUCE · 2009 to 2021
$12.3M
Mechanism of transcription-coupled DNA repair and transcription mutagenesisZIABC011202 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI KASHLEV, MIKHAIL · 2009 to 2020
$4.5M
Mechanisms of transcription fidelity in prokaryotes and eukaryotesZ01BC010795 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI KASHLEV, MIKHAIL · 2007 to 2008
$1.1M
Intramural NIH HHS Z01 BC010795Intramural NIH HHS ZIA BC011061
6 · The paper itself

Abstract

RNA nanoparticles consisting of multiple RNA strands of different sequences forming various three-dimensional structures emerge as promising carriers of siRNAs, RNA aptamers, and ribozymes. In vitro transcription of a mixture of dsDNA templates encoding all the subunits of the RNA nanoparticle may result in cotranscriptional self-assembly of the nanoparticle. Based on our experience with production of RNA nanorings, RNA nanocubes, and RNA three-way junctions, we propose a strategy for optimization of the cotranscriptional production of chemically modified ribonuclease-resistant RNA nanoparticles.

Indexed as

NanoparticlesTranscription, Genetic5' Untranslated RegionsBase SequenceHalogenationMutationRNA5' Untranslated RegionsRNA2′-F-dCTP2′-F-dUTPCotranscriptional assemblyIn vitro transcriptionRNA nanocubesRNA nanoringsT7 R&DNA polymeraseT7 RNA polymerase

Identifiers

PMID28730434
PMCPMC7927353

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.