Evidence map›Paper›PMID 28729763›Full record

ArticleBioinformation2017

Serum and Plasma Metabolomic Biomarkers for Lung Cancer.

Nishith Kumar, Md Shahjaman, Md Nurul Haque Mollah, S M Shahinul Islam, Md Aminul Hoque

Open access · hybridAbstract read
In one paragraph

Article in Bioinformation, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 67 citations in OpenAlex.

  1. Pooled it
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  5. Review
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  8. Flexible Sensing Systems for Cancer Diagnostics.Advances in experimental medicine and biology · 2022
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  9. Review
  10. BCKDK alters the metabolism of non-small cell lung cancer.Translational lung cancer research · 2021
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  12. Current and Future Development in Lung Cancer Diagnosis.International journal of molecular sciences · 2021
    Review
  13. Article
  14. Specific Gut Microbiome and Serum Metabolome Changes in Lung Cancer Patients.Frontiers in cellular and infection microbiology · 2021
    Article
  15. Article
  16. Article
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  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Nishith KumarBioinformatics Lab, Department of Statistics, Rajshahi University, Rajshahi, Bangladesh.
Md ShahjamanBioinformatics Lab, Department of Statistics, Rajshahi University, Rajshahi, Bangladesh.
Md Nurul Haque MollahBioinformatics Lab, Department of Statistics, Rajshahi University, Rajshahi, Bangladesh.
S M Shahinul IslamInstitute of Biological Sciences, Rajshahi University, Rajshahi, Bangladesh.
Md Aminul HoqueBioinformatics Lab, Department of Statistics, Rajshahi University, Rajshahi, Bangladesh.
University of Rajshahi · BDBegum Rokeya University · BD

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In drug invention and early disease prediction of lung cancer, metabolomic biomarker detection is very important. Mortality rate can be decreased, if cancer is predicted at the earlier stage. Recent diagnostic techniques for lung cancer are not prognosis diagnostic techniques. However, if we know the name of the metabolites, whose intensity levels are considerably changing between cancer subject and control subject, then it will be easy to early diagnosis the disease as well as to discover the drug. Therefore, in this paper we have identified the influential plasma and serum blood sample metabolites for lung cancer and also identified the biomarkers that will be helpful for early disease prediction as well as for drug invention. To identify the influential metabolites, we considered a parametric and a nonparametric test namely student׳s t-test as parametric and Kruskal-Wallis test as non-parametric test. We also categorized the up-regulated and down-regulated metabolites by the heatmap plot and identified the biomarkers by support vector machine (SVM) classifier and pathway analysis. From our analysis, we got 27 influential (p-value<0.05) metabolites from plasma sample and 13 influential (p-value<0.05) metabolites from serum sample. According to the importance plot through SVM classifier, pathway analysis and correlation network analysis, we declared 4 metabolites (taurine, aspertic acid, glutamine and pyruvic acid) as plasma biomarker and 3 metabolites (aspartic acid, taurine and inosine) as serum biomarker.

Indexed as

biomarker identificationKruskal-Wallis testMetabolomicspathway analysisStudent t-testsupport vector machine (SVM)

Identifiers

PMID28729763
PMCPMC5512859
OpenAlexW2729236833

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.