Evidence map›Paper›PMID 28729683›Full record

ArticleScientific reports2017

A positive feedback loop mediated by Sigma X enhances expression of the streptococcal regulator ComR.

Rabia Khan, Roger Junges, Heidi A Åmdal, Tsute Chen, Donald A Morrison, Fernanda C Petersen

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
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  6. The pneumococcal σThe Journal of biological chemistry · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Rabia KhanDepartment of Oral Biology, Faculty of Dentistry, University of Oslo, Oslo, Norway.
Roger JungesDepartment of Oral Biology, Faculty of Dentistry, University of Oslo, Oslo, Norway.
Heidi A ÅmdalDepartment of Oral Biology, Faculty of Dentistry, University of Oslo, Oslo, Norway.
Tsute ChenDepartment of Microbiology, The Forsyth Institute, Cambridge, USA.
Donald A MorrisonDepartment of Biological Sciences, College of Liberal Arts and Sciences, University of Illinois at Chicago, Chicago, USA.
Fernanda C PetersenDepartment of Oral Biology, Faculty of Dentistry, University of Oslo, Oslo, Norway. f.c.petersen@odont.uio.no.ORCID 0000-0003-4649-247X
University of Oslo · NOUniversity of Illinois Chicago · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Natural transformation is used by bacteria to take up DNA from their surroundings and incorporate it into their genomes. Streptococci do so during a transient period of competence, triggered by pheromones that they produce, secrete and sense under conditions influenced by the environment. In Streptococcus mutans, Streptococcus suis, and species of the bovis, salivarius and pyogenic groups of streptococci, the pheromone XIP is sensed by the intra-cellular regulator ComR, that in turn activates the transcription of comS, encoding the XIP precursor, and of sigX, encoding the only known alternative sigma factor in streptococci. Although induction of comR during competence has been known for more than fifteen years, the mechanism regulating its expression remains unidentified. By a combination of directional RNA-sequencing, optimal competence conditions, stepwise deletions and marker-less genome editing, we found that SigX is the missing link in overproduction of ComR. In the absence of comR induction, both sigX expression and transformation were significantly reduced. Placing comR and comS transcripts under the control of different regulators so as to form two interlocked positive feedback circuits may enable S. mutans to fine-tune the kinetics and magnitude of the competence response according to their need.

Indexed as

Feedback, PhysiologicalGene Expression Regulation, BacterialBacterial ProteinsBase SequenceCodon, TerminatorDNA, IntergenicDNA Transformation CompetenceGene EditingGene Expression ProfilingModels, BiologicalMutationPromoter Regions, GeneticRNA, MessengerSequence DeletionSigma FactorStreptococcus mutansBacterial ProteinsCodon, TerminatorDNA, IntergenicRNA, MessengerSigma Factor

Identifiers

PMID28729683
PMCPMC5519730
OpenAlexW2734492072

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.