Evidence map›Paper›PMID 28729616›Full record

ArticleScientific reports2017

Identification of a T cell gene expression clock obtained by exploiting a MZ twin design.

Daniel Remondini, Nathan Intrator, Claudia Sala, Michela Pierini, Paolo Garagnani, Isabella Zironi, Claudio Franceschi, Stefano Salvioli, Gastone Castellani

Abstract readTwin Study
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Daniel RemondiniDepartment of Physics and Astronomy, University of Bologna, Bologna, 40126, Italy. daniel.remondini@unibo.it.ORCID 0000-0003-3185-7456
Nathan IntratorDepartment of Computer Science, Exact Sciences Faculty, Tel Aviv University, Tel Aviv, Israel.
Claudia SalaDepartment of Physics and Astronomy, University of Bologna, Bologna, 40126, Italy.
Michela PieriniDepartment of Experimental, Diagnostic and Specialty Medicine, University of Bologna, Bologna, 40138, Italy.
Paolo GaragnaniInterdepartmental Center "L. Galvani", University of Bologna, Bologna, 40126, Italy.
Isabella ZironiDepartment of Physics and Astronomy, University of Bologna, Bologna, 40126, Italy.ORCID 0000-0001-7870-0267
Claudio FranceschiIRCCS, Institute of Neurological Sciences of Bologna, Bologna, 40124, Italy.
Stefano SalvioliInterdepartmental Center "L. Galvani", University of Bologna, Bologna, 40126, Italy.
Gastone CastellaniDepartment of Physics and Astronomy, University of Bologna, Bologna, 40126, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many studies investigated age-related changes in gene expression of different tissues, with scarce agreement due to the high number of affecting factors. Similarly, no consensus has been reached on which genes change expression as a function of age and not because of environment. In this study we analysed gene expression of T lymphocytes from 27 healthy monozygotic twin couples, with ages ranging over whole adult lifespan (22 to 98 years). This unique experimental design allowed us to identify genes involved in normative aging, which expression changes independently from environmental factors. We obtained a transcriptomic signature with 125 genes, from which chronological age can be estimated. This signature has been tested in two datasets of same cell type hybridized over two different platforms, showing a significantly better performance compared to random signatures. Moreover, the same signature was applied on a dataset from a different cell type (human muscle). A lower performance was obtained, indicating the possibility that the signature is T cell-specific. As a whole our results suggest that this approach can be useful to identify age-modulated genes.

Indexed as

Gene Expression ProfilingTranscriptomeAdultAgedAged, 80 and overAgingGene-Environment InteractionGenetic Association StudiesGenome, HumanHumansLongevityMiddle AgedReproducibility of ResultsT-LymphocytesTwins, MonozygoticYoung Adult

Identifiers

PMID28729616
PMCPMC5519672

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.