Evidence map›Paper›PMID 28729405›Full record

ArticleCancer discovery2017

Superenhancer Analysis Defines Novel Epigenomic Subtypes of Non-APL AML, Including an RARα Dependency Targetable by SY-1425, a Potent and Selective RARα Agonist.

Michael R McKeown, M Ryan Corces, Matthew L Eaton, Chris Fiore, Emily Lee, Jeremy T Lopez, Mei Wei Chen, Darren Smith, Steven M Chan, Julie L Koenig and 6 more

Open access · greenAbstract read
In one paragraph

Article in Cancer discovery, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed, 1 pooled it
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 1 synthesis or guideline pooled it, 135 citations in OpenAlex.

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27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 3 countries.

Michael R McKeownSyros Pharmaceuticals, Cambridge, Massachusetts.
M Ryan CorcesProgram in Cancer Biology, Cancer Institute, Institute for Stem Cell Biology and Regenerative Medicine, and Ludwig Center Stanford University School of Medicine, Stanford, California.
Matthew L EatonSyros Pharmaceuticals, Cambridge, Massachusetts.
Chris FioreSyros Pharmaceuticals, Cambridge, Massachusetts.
Emily LeeSyros Pharmaceuticals, Cambridge, Massachusetts.
Jeremy T LopezSyros Pharmaceuticals, Cambridge, Massachusetts.
Mei Wei ChenSyros Pharmaceuticals, Cambridge, Massachusetts.
Darren SmithSyros Pharmaceuticals, Cambridge, Massachusetts.
Steven M ChanPrincess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.
Julie L KoenigProgram in Cancer Biology, Cancer Institute, Institute for Stem Cell Biology and Regenerative Medicine, and Ludwig Center Stanford University School of Medicine, Stanford, California.
Kathryn AustgenSyros Pharmaceuticals, Cambridge, Massachusetts.
Matthew G GuentherSyros Pharmaceuticals, Cambridge, Massachusetts.
David A OrlandoSyros Pharmaceuticals, Cambridge, Massachusetts.
Jakob LovénSyros Pharmaceuticals, Cambridge, Massachusetts.
Christian C FritzSyros Pharmaceuticals, Cambridge, Massachusetts. rmajeti@stanford.edu cfritz@syros.com.
Ravindra MajetiProgram in Cancer Biology, Cancer Institute, Institute for Stem Cell Biology and Regenerative Medicine, and Ludwig Center Stanford University School of Medicine, Stanford, California. rmajeti@stanford.edu cfritz@syros.com.
AVEO Oncology (United States) · USInstitute for Stem Cell Biology and Regenerative Medicine · INPrincess Margaret Cancer Centre · CA

Funding

Cancer Systems Biology Scholars ProgramR25CA180993 · NCI · STANFORD UNIVERSITY · PI PLEVRITIS, SYLVIA KATINA · 2014 to 2018
$2.2M
Pre-Leukemic Hematopoietic Stem Cells and Clonal Evolution in Human AMLR01CA188055 · NCI · STANFORD UNIVERSITY · PI MAJETI, RAVINDRA · 2014 to 2018
$1.6M
NCI NIH HHS R01 CA188055NCI NIH HHS R25 CA180993
6 · The paper itself

Abstract

We characterized the enhancer landscape of 66 patients with acute myeloid leukemia (AML), identifying 6 novel subgroups and their associated regulatory loci. These subgroups are defined by their superenhancer (SE) maps, orthogonal to somatic mutations, and are associated with distinct leukemic cell states. Examination of transcriptional drivers for these epigenomic subtypes uncovers a subset of patients with a particularly strong SE at the retinoic acid receptor alpha (

Indexed as

Enhancer Elements, GeneticAgedAnimalsBenzoatesCell Line, TumorCell ProliferationCell SurvivalEpigenomicsFemaleGene Expression Regulation, NeoplasticHigh-Throughput Nucleotide SequencingHumansLeukemia, Myeloid, AcuteMiceRetinoic Acid Receptor alphaTetrahydronaphthalenesBenzoatesRARA protein, humanRetinoic Acid Receptor alphatamibaroteneTetrahydronaphthalenes

Identifiers

PMID28729405
PMCPMC5962349
OpenAlexW2738259427

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.