Evidence map›Paper›PMID 28727759›Full record

ArticlePLoS genetics2017

Use of a microfluidic platform to uncover basic features of energy and environmental stress responses in individual cells of Bacillus subtilis.

Matthew T Cabeen, Jonathan R Russell, Johan Paulsson, Richard Losick

Abstract read
In one paragraph

Article in PLoS genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Review
  3. Temporal σmSphere · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Management of Osmoprotectant Uptake Hierarchy inFrontiers in microbiology · 2020
    Article
  15. The σFrontiers in microbiology · 2020
    Review
  16. Blue Light Sensing inFrontiers in microbiology · 2019
    Article
  17. Article
  18. Single-cell Microfluidic Analysis of Bacillus subtilis.Journal of visualized experiments : JoVE · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Matthew T CabeenDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, Massachusetts, United States of America.
Jonathan R RussellDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, Massachusetts, United States of America.
Johan PaulssonDepartment of Systems Biology, Harvard Medical School, Boston, Massachusetts, United States of America.
Richard LosickDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, Massachusetts, United States of America.ORCID http://orcid.org/0000-0002-5130-6582

Funding

Role of RNA Polymerase in Bacterial DifferentionR01GM018568 · NIGMS · HARVARD UNIVERSITY · PI LOSICK, RICHARD MARC · 1985 to 2018
$11.5M
Limits and Trade-offs of Feedback ControlR01GM081563 · NIGMS · HARVARD MEDICAL SCHOOL · PI Johan Paulsson · 2008 to 2026
$4.9M
ROLE OF RNA POLYMERASE IN BACTERIAL DIFFERENTIATIONR37GM018568 · NIGMS · HARVARD UNIVERSITY · PI LOSICK, RICHARD MARC · 1990 to 1999
–
NIGMS NIH HHS R01 GM018568NIGMS NIH HHS R01 GM081563NIGMS NIH HHS R37 GM018568
6 · The paper itself

Abstract

Bacteria use a variety of stress-sensing systems to sense and respond to diverse stressors and to ensure their survival under adverse conditions. The gram-positive bacterium Bacillus subtilis responds to energy stress (ATP depletion) and to environmental stressors using two distinct stress-sensing pathways that converge on the alternative sigma factor σB to provoke a general stress response. Past efforts to study the σB stress response in bulk culture and on agarose pads were unable to visualize the responses of individual cells under tightly controlled conditions for extended periods of time. Here we use a microfluidics-based strategy to discern the basic features of σB activation in single cells in response to energy and environmental stress, both immediately upon stressor exposure and for tens of generations thereafter. Upon energy stress at various levels of stressor, cells exhibited fast, transient, and amplitude-modulated responses but not frequency modulation as previously reported. Upon environmental stress, which is mediated by the stressosome complex, wild-type cells primarily exhibited a transient and amplitude-modulated response. However, mutant cells producing only one of the four paralogous RsbR stressosome proteins showed striking and previously unseen differences. Whereas RsbRA-only cells mimicked the wild type, RsbRC-only cells displayed a slower but sustained overall response composed of repeated activation events in single cells.

Indexed as

Adenosine TriphosphateBacillus subtilisBacterial ProteinsEnergy MetabolismGene-Environment InteractionMicrofluidic Analytical TechniquesPhosphoproteinsProtein Serine-Threonine KinasesSigma FactorSingle-Cell AnalysisStress, PhysiologicalAdenosine TriphosphateBacterial ProteinsFliA protein, BacteriaPhosphoproteinsProtein Serine-Threonine KinasesRsbR protein, Bacillus subtilisRsbT protein, Bacillus subtilisSigma Factor

Identifiers

PMID28727759
PMCPMC5542698

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.