Evidence map›Paper›PMID 28726643›Full record

ArticleThe Journal of biological chemistry2017

Reconstructed ancestral enzymes reveal that negative selection drove the evolution of substrate specificity in ADP-dependent kinases.

Víctor Castro-Fernandez, Alejandra Herrera-Morande, Ricardo Zamora, Felipe Merino, Felipe Gonzalez-Ordenes, Felipe Padilla-Salinas, Humberto M Pereira, Jose Brandão-Neto, Richard C Garratt, Victoria Guixe

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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  4. Article
  5. Review
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  8. Article
  9. Review
  10. Mechanisms of protein evolution.Protein science : a publication of the Protein Society · 2022
    Review
  11. Article
  12. Article
  13. ADP-Dependent Kinases From the Archaeal OrderFrontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Víctor Castro-FernandezFrom the Departamento de Biología, Facultad de Ciencias, Universidad de Chile, Santiago 800003, Chile, vcasfe@ug.uchile.cl.ORCID 0000-0002-4309-6415
Alejandra Herrera-MorandeFrom the Departamento de Biología, Facultad de Ciencias, Universidad de Chile, Santiago 800003, Chile.
Ricardo ZamoraFrom the Departamento de Biología, Facultad de Ciencias, Universidad de Chile, Santiago 800003, Chile.
Felipe MerinoFrom the Departamento de Biología, Facultad de Ciencias, Universidad de Chile, Santiago 800003, Chile.
Felipe Gonzalez-OrdenesFrom the Departamento de Biología, Facultad de Ciencias, Universidad de Chile, Santiago 800003, Chile.
Felipe Padilla-SalinasFrom the Departamento de Biología, Facultad de Ciencias, Universidad de Chile, Santiago 800003, Chile.
Humberto M Pereirathe São Carlos Institute of Physics, University of São Paulo, São Carlos, São Paulo 13563-120, Brazil, and.
Jose Brandão-Netothe Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DF, United Kingdom.
Richard C Garrattthe São Carlos Institute of Physics, University of São Paulo, São Carlos, São Paulo 13563-120, Brazil, and.
Victoria GuixeFrom the Departamento de Biología, Facultad de Ciencias, Universidad de Chile, Santiago 800003, Chile, vguixe@uchile.cl.
Universidad de Santiago de Chile · CLUniversidade Federal de São Carlos · BRDiamond Light Source · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

One central goal in molecular evolution is to pinpoint the mechanisms and evolutionary forces that cause an enzyme to change its substrate specificity; however, these processes remain largely unexplored. Using the glycolytic ADP-dependent kinases of archaea, including the orders

Indexed as

Evolution, MolecularAmino Acid SequenceATP Synthetase ComplexesEuryarchaeotaFructosephosphatesGlucoseKineticsModels, MolecularMutationPhylogenyProtein ConformationSubstrate SpecificityATP Synthetase Complexesfructose-6-phosphateFructosephosphatesGlucoseADP-dependent kinaseancestral enzymesarchaeacrystal structureglucokinasephosphofructokinaseprotein evolutionsubstrate specificity

Identifiers

PMID28726643
PMCPMC5612095
OpenAlexW2737788517

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.