Evidence map›Paper›PMID 28726379›Full record

ArticleAnalytical chemistry2017

Topological Dissection of the Membrane Transport Protein Mhp1 Derived from Cysteine Accessibility and Mass Spectrometry.

Antonio N Calabrese, Scott M Jackson, Lynsey N Jones, Oliver Beckstein, Florian Heinkel, Joerg Gsponer, David Sharples, Marta Sans, Maria Kokkinidou, Arwen R Pearson and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Analytical chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. The role of TMS 12 in the staphylococcal multidrug efflux protein QacA.The Journal of antimicrobial chemotherapy · 2023
    Article
  3. Integrated AlphaFold2 and DEER investigation of the conformational dynamics of a pH-dependent APC antiporter.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. MetaUniDec: High-Throughput Deconvolution of Native Mass Spectra.Journal of the American Society for Mass Spectrometry · 2019
    Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 5 countries.

Antonio N Calabrese
Scott M Jackson
Lynsey N Jones
Oliver BecksteinDepartment of Physics, Arizona State University , Tempe, Arizona 85287-1504, United States.
Florian HeinkelCentre for High-Throughput Biology, University of British Columbia , Vancouver, British Columbia, Canada V6T 1Z4.
Joerg GsponerCentre for High-Throughput Biology, University of British Columbia , Vancouver, British Columbia, Canada V6T 1Z4.
David Sharples
Marta SansHamburg Centre for Ultrafast Imaging, Institute for Nanostructure and Solid State Physics, Universität Hamburg , Hamburg 22761, Germany.
Maria KokkinidouHamburg Centre for Ultrafast Imaging, Institute for Nanostructure and Solid State Physics, Universität Hamburg , Hamburg 22761, Germany.
Arwen R PearsonHamburg Centre for Ultrafast Imaging, Institute for Nanostructure and Solid State Physics, Universität Hamburg , Hamburg 22761, Germany.
Sheena E Radford
Alison E Ashcroft
Peter J F HendersonORCID 0000-0002-9187-0938
University of Leeds · GBUniversität Hamburg · DEUniversity of British Columbia · CAArizona State University · US

Funding

Molecular mechanisms of secondary active transportersR01GM118772 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI BECKSTEIN, OLIVER · 2016 to 2020
$1.5M
Biotechnology and Biological Sciences Research Council BB/M012573/1European Research Council 322408NIGMS NIH HHS R01 GM118772Wellcome Trust
6 · The paper itself

Abstract

Cys accessibility and quantitative intact mass spectrometry (MS) analyses have been devised to study the topological transitions of Mhp1, the membrane protein for sodium-linked transport of hydantoins from Microbacterium liquefaciens. Mhp1 has been crystallized in three forms (outward-facing open, outward-facing occluded with substrate bound, and inward-facing open). We show that one natural cysteine residue, Cys327, out of three, has an enhanced solvent accessibility in the inward-facing (relative to the outward-facing) form. Reaction of the purified protein, in detergent, with the thiol-reactive N-ethylmalemide (NEM), results in modification of Cys327, suggesting that Mhp1 adopts predominantly inward-facing conformations. Addition of either sodium ions or the substrate 5-benzyl-l-hydantoin (L-BH) does not shift this conformational equilibrium, but systematic co-addition of the two results in an attenuation of labeling, indicating a shift toward outward-facing conformations that can be interpreted using conventional enzyme kinetic analyses. Such measurements can afford the K

Indexed as

Mass SpectrometryBacterial ProteinsBinding SitesCysteineEthylmaleimideHydantoinsKineticsMembrane Transport ProteinsMicrococcaceaeMolecular Dynamics SimulationMutagenesis, Site-DirectedProtein BindingSodiumSubstrate Specificity5-benzylhydantoinBacterial ProteinsCysteineEthylmaleimideHydantoinsMembrane Transport ProteinsSodium

Identifiers

PMID28726379
PMCPMC5588088
OpenAlexW2737033486

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.