Evidence map›Paper›PMID 28726126›Full record

ArticleExtremophiles : life under extreme conditions2017

Characterization of a cold-adapted DNA photolyase from C. psychrerythraea 34H.

Sudipto Munshi, Ananthi Rajamoorthi, Robert J Stanley

Open access · greenAbstract read
In one paragraph

Article in Extremophiles : life under extreme conditions, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Sudipto MunshiDepartment of Chemistry, Temple University, Philadelphia, PA, 19122, USA.
Ananthi RajamoorthiDepartment of Chemistry, Temple University, Philadelphia, PA, 19122, USA.
Robert J StanleyDepartment of Chemistry, Temple University, Philadelphia, PA, 19122, USA. rstanley@temple.edu.
Temple University · US

Funding

Division of Chemistry CHE-0847855NASA NNX13AH33GShared Services Center NASA 80NSSC17K0033
6 · The paper itself

Abstract

The phrB gene encoding a putative cold-adapted DNA photolyase was cloned from the bacterial genomic DNA of Colwellia psychrerythraea 34H, a psychrophilic bacterium. Recombinant DNA photolyase, rCpPL, was overexpressed and purified from three different vectors. rCpPL binds its DNA substrate by flipping a cyclobutane pyrimidine dimer (CPD) into its active site and repairs CPD-containing DNA in vitro. rCpPL contains one catalytic flavin adenine dinucleotide (FAD) cofactor, but displays promiscuity in cofactor binding, in which either a flavin mononucleotide (FMN) or a methenyltetrahydrofolate (MTHF) molecule is bound as an antenna molecule and found in sub-stoichiometric amounts. The UV/Vis spectrum of oxidized rCpPL shows that the FAD

Indexed as

AcclimatizationCold TemperatureAbsorption, RadiationAlteromonadaceaeBacterial ProteinsBinding SitesCoenzymesDeoxyribodipyrimidine Photo-LyaseFlavin-Adenine DinucleotideProtein BindingPyrimidine DimersUltraviolet RaysBacterial ProteinsCoenzymesDeoxyribodipyrimidine Photo-LyaseFlavin-Adenine DinucleotidePyrimidine DimersCyclobutane pyrimidine dimerDNA repairPhotolyasePsychrophilic

Identifiers

PMID28726126
PMCPMC7385525
OpenAlexW2738100772

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.