Evidence map›Paper›PMID 28724631›Full record

ArticleThe Journal of biological chemistry2017

The Axl kinase domain in complex with a macrocyclic inhibitor offers first structural insights into an active TAM receptor kinase.

Ketan S Gajiwala, Neil Grodsky, Ben Bolaños, Junli Feng, RoseAnn Ferre, Sergei Timofeevski, Meirong Xu, Brion W Murray, Ted W Johnson, Al Stewart

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 61 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Ketan S GajiwalaFrom Oncology Medicinal Chemistry and ketan.gajiwala@pfizer.com.
Neil GrodskyFrom Oncology Medicinal Chemistry and.
Ben BolañosFrom Oncology Medicinal Chemistry and.
Junli FengFrom Oncology Medicinal Chemistry and.
RoseAnn FerreFrom Oncology Medicinal Chemistry and.
Sergei TimofeevskiOncology Research and Development, Pfizer Worldwide Research and Development, San Diego, California 92121.
Meirong XuOncology Research and Development, Pfizer Worldwide Research and Development, San Diego, California 92121.
Brion W MurrayOncology Research and Development, Pfizer Worldwide Research and Development, San Diego, California 92121.
Ted W JohnsonFrom Oncology Medicinal Chemistry and.
Al StewartFrom Oncology Medicinal Chemistry and.
Institute of Medicinal Plant Development · CNPfizer (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The receptor tyrosine kinase family consisting of Tyro3, Axl, and Mer (TAM) is one of the most recently identified receptor tyrosine kinase families. TAM receptors are up-regulated postnatally and maintained at high levels in adults. They all play an important role in immunity, but Axl has also been implicated in cancer and therefore is a target in the discovery and development of novel therapeutics. However, of the three members of the TAM family, the Axl kinase domain is the only one that has so far eluded structure determination. To this end, using differential scanning fluorimetry and hydrogen-deuterium exchange mass spectrometry, we show here that a lower stability and greater dynamic nature of the Axl kinase domain may account for its poor crystallizability. We present the first structural characterization of the Axl kinase domain in complex with a small-molecule macrocyclic inhibitor. The Axl crystal structure revealed two distinct conformational states of the enzyme, providing a first glimpse of what an active TAM receptor kinase may look like and suggesting a potential role for the juxtamembrane region in enzyme activity. We noted that the ATP/inhibitor-binding sites of the TAM members closely resemble each other, posing a challenge for the design of a selective inhibitor. We propose that the differences in the conformational dynamics among the TAM family members could potentially be exploited to achieve inhibitor selectivity for targeted receptors.

Indexed as

Amino Acid SequenceAxl Receptor Tyrosine KinaseBinding SitesCell MembraneDrug DesignEnzyme StabilityHumansLigandsMacrocyclic CompoundsModels, MolecularPhosphorylationProtein BindingProtein DomainsProtein Kinase InhibitorsProto-Oncogene ProteinsReceptor Protein-Tyrosine KinasesAXL protein, humanAxl Receptor Tyrosine KinaseLigandsMacrocyclic CompoundsProtein Kinase InhibitorsProto-Oncogene ProteinsReceptor Protein-Tyrosine Kinasesenzyme inhibitorprotein dynamicprotein kinaseprotein stabilityprotein structure

Identifiers

PMID28724631
PMCPMC5612104
OpenAlexW2737606003

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.