Evidence map›Paper›PMID 28724529›Full record

ArticleThe EMBO journal2017

Coactivators and general transcription factors have two distinct dynamic populations dependent on transcription.

Nikolaos Vosnakis, Marc Koch, Elisabeth Scheer, Pascal Kessler, Yves Mély, Pascal Didier, László Tora

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Nikolaos VosnakisInstitut de Génétique et de Biologie Moléculaire et Cellulaire, Illkirch, France.
Marc KochInstitut de Génétique et de Biologie Moléculaire et Cellulaire, Illkirch, France.ORCID 0000-0002-2678-235X
Elisabeth ScheerInstitut de Génétique et de Biologie Moléculaire et Cellulaire, Illkirch, France.
Pascal KesslerInstitut de Génétique et de Biologie Moléculaire et Cellulaire, Illkirch, France.ORCID 0000-0001-7334-278X
Yves MélyUniversité de Strasbourg, Illkirch, France.
Pascal DidierUniversité de Strasbourg, Illkirch, France.
László ToraInstitut de Génétique et de Biologie Moléculaire et Cellulaire, Illkirch, France laszlo@igbmc.fr.ORCID 0000-0001-7398-2250
Centre National de la Recherche Scientifique · FRLaboratoire de Biophotonique et Pharmacologie · FR

Funding

European Research Council 340551
6 · The paper itself

Abstract

SAGA and ATAC are two distinct chromatin modifying co-activator complexes with distinct enzymatic activities involved in RNA polymerase II (Pol II) transcription regulation. To investigate the mobility of co-activator complexes and general transcription factors in live-cell nuclei, we performed imaging experiments based on photobleaching. SAGA and ATAC, but also two general transcription factors (TFIID and TFIIB), were highly dynamic, exhibiting mainly transient associations with chromatin, contrary to Pol II, which formed more stable chromatin interactions. Fluorescence correlation spectroscopy analyses revealed that the mobile pool of the two co-activators, as well as that of TFIID and TFIIB, can be subdivided into "fast" (free) and "slow" (chromatin-interacting) populations. Inhibiting transcription elongation decreased H3K4 trimethylation and reduced the "slow" population of SAGA, ATAC, TFIIB and TFIID In addition, inhibiting histone H3K4 trimethylation also reduced the "slow" populations of SAGA and ATAC Thus, our results demonstrate that in the nuclei of live cells the equilibrium between fast and slow population of SAGA or ATAC complexes is regulated by active transcription via changes in the abundance of H3K4me3 on chromatin.

Indexed as

Transcription, GeneticCell LineCell NucleusChromatinHumansOptical ImagingTranscription FactorsChromatinTranscription Factorsdiffusion constantFCSFLIPFRAPtudor domain

Identifiers

PMID28724529
PMCPMC5599802
OpenAlexW2739263217

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.