Evidence map›Paper›PMID 28724443›Full record

ArticleMicrobiome2017

Metagenomics of urban sewage identifies an extensively shared antibiotic resistome in China.

Jian-Qiang Su, Xin-Li An, Bing Li, Qing-Lin Chen, Michael R Gillings, Hong Chen, Tong Zhang, Yong-Guan Zhu

Erratum issuedAbstract read
In one paragraph

Article in Microbiome, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 90 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Dynamics and virulence ofApplied and environmental microbiology · 2026
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30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Jian-Qiang SuKey Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, 1799 Jimei Road, 361021, Xiamen, China.
Xin-Li AnKey Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, 1799 Jimei Road, 361021, Xiamen, China.
Bing LiDivision of Energy & Environment, Graduate School at Shenzhen, Tsinghua University, 518055, Shenzhen, China.
Qing-Lin ChenKey Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, 1799 Jimei Road, 361021, Xiamen, China.
Michael R GillingsDepartment of Biological Sciences, Macquarie University, Sydney, NSW, 2109, Australia.
Hong ChenDepartment of Environmental Engineering, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China.
Tong ZhangEnvironmental Biotechnology Laboratory, The University of Hong Kong, Pokfulam Road, Hong Kong, China. zhangt@hku.hk.
Yong-Guan ZhuKey Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, 1799 Jimei Road, 361021, Xiamen, China. ygzhu@iue.ac.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAntibiotic-resistant pathogens are challenging treatment of infections worldwide. Urban sewage is potentially a major conduit for dissemination of antibiotic resistance genes into various environmental compartments. However, the diversity and abundance of such genes in wastewater are not well known.

methodsHere, seasonal and geographical distributions of antibiotic resistance genes and their host bacterial communities from Chinese urban sewage were characterized, using metagenomic analyses and 16S rRNA gene-based Illumina sequencing, respectively.

resultsIn total, 381 different resistance genes were detected, and these genes were extensively shared across China, with no geographical clustering. Seasonal variation in abundance of resistance genes was observed, with average concentrations of 3.27 × 10

conclusionsThis study provides a baseline for investigating environmental dissemination of resistance elements and raises the possibility of using the abundance of resistance genes in sewage as a tool for antibiotic stewardship.

Indexed as

Genes, BacterialMetagenomicsAnti-Bacterial AgentsAntimicrobial StewardshipBacteriaChinaDrug Resistance, BacterialGastrointestinal MicrobiomeHigh-Throughput Nucleotide SequencingHumansRNA, Ribosomal, 16SSewageUrban RenewalAnti-Bacterial AgentsRNA, Ribosomal, 16SSewageAntibiotic resistanceEnvironmentEvolutionHuman gut microbiomePollution

Identifiers

PMID28724443
PMCPMC5517792

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.