Evidence map›Paper›PMID 28724058›Full record

ArticleArchives of endocrinology and metabolism2017

Search for DQ2.5 and DQ8 alleles using a lower cost technique in patients with type 1 diabetes and celiac disease in a population of southern Brazil.

Marília D Bastos, Thayne W Kowalski, Márcia Puñales, Balduíno Tschiedel, Luiza M Mariath, Ana Luiza G Pires, Lavínia S Faccini, Themis R Silveira

Abstract read
In one paragraph

Article in Archives of endocrinology and metabolism, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers, 1 of them a synthesis that pooled it.

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0cells of the map it votes in
2citing papers in PubMed, 1 pooled it
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

8 authors.

Marília D BastosPrograma de Pós-Graduação em Saúde da Criança e do Adolescente, Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, RS, Brasil. Universidade de Santa Cruz do Sul (Unisc), Santa Cruz do Sul, RS, Brasil.
Thayne W KowalskiDepartamento de Genética, UFRGS, Porto Alegre, RS, Brasil.
Márcia PuñalesInstituto da Criança com Diabetes, Hospital da Criança Conceição, Porto Alegre, RS, Brasil.
Balduíno TschiedelInstituto da Criança com Diabetes, Hospital da Criança Conceição, Porto Alegre, RS, Brasil.
Luiza M MariathDepartamento de Genética, UFRGS, Porto Alegre, RS, Brasil.
Ana Luiza G PiresPrograma de Pós-Graduação em Saúde da Criança e do Adolescente, UFRGS, Porto Alegre, RS, Brasil.
Lavínia S FacciniPrograma de Pós-Graduação em Saúde da Criança e do Adolescente, UFRGS, Porto Alegre, RS, Brasil. Departamento de Genética, UFRGS, Porto Alegre, RS, Brasil. Instituto Nacional de Genética Médica Populacional, Porto Alegre, RS, Brasil.
Themis R SilveiraPrograma de Pós-Graduação em Saúde da Criança e do Adolescente, UFRGS, Porto Alegre, RS, Brasil. Hospital da Criança Santo Antônio, Porto Alegre, RS, Brasil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveTo evaluate the frequency of DQ2.5 and DQ8 alleles using the Tag-single-nucleotide polymorphism (Tag-SNP) technique in individuals with type 1 diabetes mellitus (T1DM) and celiac disease (CD) in southern Brazil. MATERIALS AND

methodsIn a prospective design, we performed the search for DQA1*0501 and DQB1*0201 alleles for DQ2.5 and DQB1*0302 for DQ8 through Real-Time Polymerase Chain Reaction (RT-PCR) technique, using TaqMan Genotyping Assays (Applied Biosystems, USA). The diagnosis of CD was established by duodenal biopsy and genotypic determination performed by StepOne Software v2.3. Allelic and genotypic frequencies were compared between groups using Chi-square and Fisher's exact tests and the multiple comparisons using Finner's adjustment.

resultsThree hundred and sixty two patients with a median age of 14 years were divided into 3 groups: T1DM without CD (264); T1DM with CD (32) and CD without T1DM (66). In 97% of individuals with T1DM and CD and 76% of individuals with CD without T1DM, respectively, the alleles DQ2.5 and/or DQ8 were identified (p < 0.001). DQ2.5 was more common in individuals with CD (p = 0.004) and DQ8 was more common in individuals with type 1 diabetes (p = 0.008).

conclusionsThe evaluation of the alleles for DQ2.5 and DQ8 by Tag-SNP technique showed a high negative predictive value among those with T1DM, similar to that described by the conventional technique. The high frequency of DQ8 alleles in individuals with T1DM did not allow differentiating those at higher risk of developing T1DM.

Indexed as

Celiac DiseaseDiabetes Mellitus, Type 1FemaleGene FrequencyGenetic Predisposition to DiseaseGenotypeHLA-DQ alpha-ChainsHLA-DQ beta-ChainsHumansMalePolymorphism, Single NucleotideProspective StudiesReal-Time Polymerase Chain ReactionRisk FactorsHLA-DQA1 antigenHLA-DQ alpha-ChainsHLA-DQbeta antigenHLA-DQ beta-Chains

Identifiers

PMID28724058
PMCPMC10522058

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.