Evidence map›Paper›PMID 28723067›Full record

ArticleACS nano2017

Structural and Spectroscopic Properties of Assemblies of Self-Replicating Peptide Macrocycles.

Pim W J M Frederix, Julien Idé, Yigit Altay, Gaël Schaeffer, Mathieu Surin, David Beljonne, Anna S Bondarenko, Thomas L C Jansen, Sijbren Otto, Siewert J Marrink

Abstract read
In one paragraph

Article in ACS nano, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Building Molecules by a Self-Replicator That Catalyzes Acyl Hydrazone Formation.Angewandte Chemie (International ed. in English) · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Assessment of the MARTINI 3 Performance for Short Peptide Self-Assembly.Journal of chemical theory and computation · 2024
    Article
  8. Enantioselective Self-Replicators.Journal of the American Chemical Society · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Pim W J M FrederixUniversity of Groningen, Groningen Biomolecular Sciences and Biotechnology Institute , Nijenborgh 7, 9747AG Groningen, The Netherlands.ORCID 0000-0002-6892-5611
Julien IdéLaboratory of Chemistry of Novel Materials, University of Mons - UMONS , Place du Parc 20, B-7000 Mons, Belgium.
Yigit AltayUniversity of Groningen, Center for Systems Chemistry, Stratingh Institute for Chemistry , Nijenborgh 4, 9747AG Groningen, The Netherlands.
Gaël SchaefferUniversity of Groningen, Center for Systems Chemistry, Stratingh Institute for Chemistry , Nijenborgh 4, 9747AG Groningen, The Netherlands.
Mathieu SurinLaboratory of Chemistry of Novel Materials, University of Mons - UMONS , Place du Parc 20, B-7000 Mons, Belgium.
David BeljonneLaboratory of Chemistry of Novel Materials, University of Mons - UMONS , Place du Parc 20, B-7000 Mons, Belgium.
Anna S BondarenkoUniversity of Groningen, Zernike Institute for Advanced Materials , Nijenborgh 4, 9747AG Groningen, The Netherlands.ORCID 0000-0001-5242-3281
Thomas L C JansenUniversity of Groningen, Zernike Institute for Advanced Materials , Nijenborgh 4, 9747AG Groningen, The Netherlands.ORCID 0000-0001-6066-6080
Sijbren OttoUniversity of Groningen, Center for Systems Chemistry, Stratingh Institute for Chemistry , Nijenborgh 4, 9747AG Groningen, The Netherlands.ORCID 0000-0003-0259-5637
Siewert J MarrinkUniversity of Groningen, Groningen Biomolecular Sciences and Biotechnology Institute , Nijenborgh 7, 9747AG Groningen, The Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Self-replication at the molecular level is often seen as essential to the early origins of life. Recently a mechanism of self-replication has been discovered in which replicator self-assembly drives the process. We have studied one of the examples of such self-assembling self-replicating molecules to a high level of structural detail using a combination of computational and spectroscopic techniques. Molecular Dynamics simulations of self-assembled stacks of peptide-derived replicators provide insights into the structural characteristics of the system and serve as the basis for semiempirical calculations of the UV-vis, circular dichroism (CD) and infrared (IR) absorption spectra that reflect the chiral organization and peptide secondary structure of the stacks. Two proposed structural models are tested by comparing calculated spectra to experimental data from electron microscopy, CD and IR spectroscopy, resulting in a better insight into the specific supramolecular interactions that lead to self-replication. Specifically, we find a cooperative self-assembly process in which β-sheet formation leads to well-organized structures, while also the aromatic core of the macrocycles plays an important role in the stability of the resulting fibers.

Indexed as

Circular DichroismMolecular Dynamics SimulationNanostructuresPeptidesPeptidesmolecular dynamicsnanostructurespeptidesself-assemblyself-replicationsimulationspectroscopy

Identifiers

PMID28723067
PMCPMC5616102

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.