Evidence map›Paper›PMID 28721252›Full record

ArticleNPJ biofilms and microbiomes2016

Biofilm development of an opportunistic model bacterium analysed at high spatiotemporal resolution in the framework of a precise flow cell.

Chun Ping Lim, Phuong Nguyen Quoc Mai, Dan Roizman Sade, Yee Cheong Lam, Yehuda Cohen

Abstract read
In one paragraph

Article in NPJ biofilms and microbiomes, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Monitoring biofilm growth and dispersal in real-time with impedance biosensors.Journal of industrial microbiology & biotechnology · 2023
    Article
  3. Article
  4. Article
  5. Probing the internal micromechanical properties ofNPJ biofilms and microbiomes · 2017
    Article
  6. Single microcolony diffusion analysis inNPJ biofilms and microbiomes
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Chun Ping LimSingapore Centre for Environmental Life Sciences Engineering (SCELSE), Nanyang Technological University, Singapore.
Phuong Nguyen Quoc MaiSingapore Centre for Environmental Life Sciences Engineering (SCELSE), Nanyang Technological University, Singapore.
Dan Roizman SadeSingapore Centre for Environmental Life Sciences Engineering (SCELSE), Nanyang Technological University, Singapore.
Yee Cheong LamThe School of Mechanical and Aerospace Engineering, Nanyang Technological University, Singapore.
Yehuda CohenSingapore Centre for Environmental Life Sciences Engineering (SCELSE), Nanyang Technological University, Singapore.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Life of bacteria is governed by the physical dimensions of life in microscales, which is dominated by fast diffusion and flow at low Reynolds numbers. Microbial biofilms are structurally and functionally heterogeneous and their development is suggested to be interactively related to their microenvironments. In this study, we were guided by the challenging requirements of precise tools and engineered procedures to achieve reproducible experiments at high spatial and temporal resolutions. Here, we developed a robust precise engineering approach allowing for the quantification of real-time, high-content imaging of biofilm behaviour under well-controlled flow conditions. Through the merging of engineering and microbial ecology, we present a rigorous methodology to quantify biofilm development at resolutions of single micrometre and single minute, using a newly developed flow cell. We designed and fabricated a high-precision flow cell to create defined and reproducible flow conditions. We applied high-content confocal laser scanning microscopy and developed image quantification using a model biofilm of a defined opportunistic strain,

Identifiers

PMID28721252
PMCPMC5515269

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.