Evidence map›Paper›PMID 28720891›Full record

ArticleScientific reports2017

Whole exome sequencing reveals inherited and de novo variants in autism spectrum disorder: a trio study from Saudi families.

Bashayer Al-Mubarak, Mohamed Abouelhoda, Aisha Omar, Hesham AlDhalaan, Mohammed Aldosari, Michael Nester, Hussain A Alshamrani, Mohamed El-Kalioby, Ewa Goljan, Renad Albar and 9 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 98 citations in OpenAlex.

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  16. Decoding the genetic landscape of autism: A comprehensive review.World journal of clinical pediatrics · 2024
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4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 2 institutions in 1 country.

Bashayer Al-MubarakBehavioral Genetics unit, Department of Genetics, King Faisal Specialist Hospital & Research Center, P.O. Box 3354, Riyadh, 11211, Saudi Arabia. BAl-Mubarak@kfshrc.edu.sa.
Mohamed AbouelhodaSaudi Human Genome Program, King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia.
Aisha OmarBehavioral Genetics unit, Department of Genetics, King Faisal Specialist Hospital & Research Center, P.O. Box 3354, Riyadh, 11211, Saudi Arabia.
Hesham AlDhalaanCenter for Autism Research, King Faisal Specialist Hospital & Research Centre, P.O. Box 3354, Riyadh, 11211, Saudi Arabia.
Mohammed AldosariCenter for Autism Research, King Faisal Specialist Hospital & Research Centre, P.O. Box 3354, Riyadh, 11211, Saudi Arabia.
Michael NesterDepartment of Neurosciences, King Faisal Specialist Hospital & Research Centre, P.O. Box 3354, Riyadh, 11211, Saudi Arabia.
Hussain A AlshamraniPediatric Department, King Faisal Specialist Hospital & Research Centre, P.O. Box 3354, Riyadh, 11211, Saudi Arabia.
Mohamed El-KaliobySaudi Human Genome Program, King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia.ORCID 0000-0001-7655-4198
Ewa GoljanSaudi Human Genome Program, King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia.ORCID 0000-0001-6235-3387
Renad AlbarSaudi Human Genome Program, King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia.
Shazia SubhaniSaudi Human Genome Program, King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia.
Asma TahirBehavioral Genetics unit, Department of Genetics, King Faisal Specialist Hospital & Research Center, P.O. Box 3354, Riyadh, 11211, Saudi Arabia.
Sultana AsfahaniCenter for Autism Research, King Faisal Specialist Hospital & Research Centre, P.O. Box 3354, Riyadh, 11211, Saudi Arabia.
Alaa EskandraniCenter for Autism Research, King Faisal Specialist Hospital & Research Centre, P.O. Box 3354, Riyadh, 11211, Saudi Arabia.
Ahmed AlmusaiabBehavioral Genetics unit, Department of Genetics, King Faisal Specialist Hospital & Research Center, P.O. Box 3354, Riyadh, 11211, Saudi Arabia.
Amna MagrashiBehavioral Genetics unit, Department of Genetics, King Faisal Specialist Hospital & Research Center, P.O. Box 3354, Riyadh, 11211, Saudi Arabia.
Jameela ShinwariBehavioral Genetics unit, Department of Genetics, King Faisal Specialist Hospital & Research Center, P.O. Box 3354, Riyadh, 11211, Saudi Arabia.
Dorota MoniesSaudi Human Genome Program, King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia.
Nada Al TassanBehavioral Genetics unit, Department of Genetics, King Faisal Specialist Hospital & Research Center, P.O. Box 3354, Riyadh, 11211, Saudi Arabia. naltassan@kfshrc.edu.sa.ORCID 0000-0001-9076-0334
King Faisal Specialist Hospital & Research Centre · SAKing Abdulaziz City for Science and Technology · SA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Autism spectrum disorder (ASD) is a complex neurodevelopmental disorder with genetic and clinical heterogeneity. The interplay of de novo and inherited rare variants has been suspected in the development of ASD. Here, we applied whole exome sequencing (WES) on 19 trios from singleton Saudi families with ASD. We developed an analysis pipeline that allows capturing both de novo and inherited rare variants predicted to be deleterious. A total of 47 unique rare variants were detected in 17 trios including 38 which are newly discovered. The majority were either autosomal recessive or X-linked. Our pipeline uncovered variants in 15 ASD-candidate genes, including 5 (GLT8D1, HTATSF1, OR6C65, ITIH6 and DDX26B) that have not been reported in any human condition. The remaining variants occurred in genes formerly associated with ASD or other neurological disorders. Examples include SUMF1, KDM5B and MXRA5 (Known-ASD genes), PRODH2 and KCTD21 (implicated in schizophrenia), as well as USP9X and SMS (implicated in intellectual disability). Consistent with expectation and previous studies, most of the genes implicated herein are enriched for biological processes pertaining to neuronal function. Our findings underscore the private and heterogeneous nature of the genetic architecture of ASD even in a population with high consanguinity rates.

Indexed as

Exome SequencingAutism Spectrum DisorderConsanguinityFemaleGenetic Predisposition to DiseaseHumansMaleMutationNeurodevelopmental DisordersSaudi Arabia

Identifiers

PMID28720891
PMCPMC5515956
OpenAlexW2736265666

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.