Evidence map›Paper›PMID 28719003›Full record

ArticleAmerican journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics2017

Mutation intolerant genes and targets of FMRP are enriched for nonsynonymous alleles in schizophrenia.

Ganna Leonenko, Alexander L Richards, James T Walters, Andrew Pocklington, Kimberly Chambert, Mariam M Al Eissa, Sally I Sharp, Niamh L O'Brien, David Curtis, Nicholas J Bass and 10 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

  1. Functional Profiling ofCirculation. Genomic and precision medicine · 2025
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  6. Protein Translation and Psychiatric Disorders.The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry · 2020
    Review
  7. Genetic association and functional characterization of MCPH1 gene variation in bipolar disorder and schizophrenia.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2019
    Article
  8. Review
  9. Article
  10. Article
  11. Recent Advances in the Genetics of Schizophrenia.Molecular neuropsychiatry · 2018
    Review
  12. Article
  13. Review
  14. Psychiatric Genomics: An Update and an Agenda.The American journal of psychiatry · 2018
    Review
  15. Mutation intolerant genes and targets of FMRP are enriched for nonsynonymous alleles in schizophrenia.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 7 institutions in 4 countries.

Ganna LeonenkoDivision of Psychological Medicine and Clinical Neurosciences, MRC Centre for Neuropsychiatric Genetics and Genomics, Cardiff University School of Medicine, Cardiff, UK.ORCID http://orcid.org/0000-0001-8025-661X
Alexander L RichardsDivision of Psychological Medicine and Clinical Neurosciences, MRC Centre for Neuropsychiatric Genetics and Genomics, Cardiff University School of Medicine, Cardiff, UK.
James T WaltersDivision of Psychological Medicine and Clinical Neurosciences, MRC Centre for Neuropsychiatric Genetics and Genomics, Cardiff University School of Medicine, Cardiff, UK.
Andrew PocklingtonDivision of Psychological Medicine and Clinical Neurosciences, MRC Centre for Neuropsychiatric Genetics and Genomics, Cardiff University School of Medicine, Cardiff, UK.
Kimberly ChambertStanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, Massachusetts.
Mariam M Al EissaDivision of Psychiatry, Molecular Psychiatry Laboratory, University College London, London, UK.
Sally I SharpDivision of Psychiatry, Molecular Psychiatry Laboratory, University College London, London, UK.
Niamh L O'BrienDivision of Psychiatry, Molecular Psychiatry Laboratory, University College London, London, UK.
David CurtisUCL Genetics Institute, UCL, London, UK.
Nicholas J BassDivision of Psychiatry, Molecular Psychiatry Laboratory, University College London, London, UK.
Andrew McQuillinDivision of Psychiatry, Molecular Psychiatry Laboratory, University College London, London, UK.
Christina HultmanDepartment of Medical Epidemiology and Biostatistics, Karolinska Institute, Stockholm, Sweden.
Jennifer L MoranStanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, Massachusetts.
Steven A McCarrollStanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, Massachusetts.
Pamela SklarIcahn School of Medicine at Mount Sinai, New York, New York.
Benjamin M NealeStanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, Massachusetts.
Peter A HolmansDivision of Psychological Medicine and Clinical Neurosciences, MRC Centre for Neuropsychiatric Genetics and Genomics, Cardiff University School of Medicine, Cardiff, UK.
Michael J OwenDivision of Psychological Medicine and Clinical Neurosciences, MRC Centre for Neuropsychiatric Genetics and Genomics, Cardiff University School of Medicine, Cardiff, UK.
Patrick F SullivanDepartment of Medical Epidemiology and Biostatistics, Karolinska Institute, Stockholm, Sweden.
Michael C O'DonovanDivision of Psychological Medicine and Clinical Neurosciences, MRC Centre for Neuropsychiatric Genetics and Genomics, Cardiff University School of Medicine, Cardiff, UK.
Cardiff University · GBMRC Laboratory for Molecular Cell Biology · GBBroad Institute · USIcahn School of Medicine at Mount Sinai · USInstitute of Genetics · HUKarolinska Institutet · SEUniversity of North Carolina at Chapel Hill · US

Funding

A Large-Scale Schizophrenia Association Study in SwedenR01MH077139 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SULLIVAN, PATRICK F · 2007 to 2018
$9.9M
2/2 Large-Scale Genetic Studies of Schizophrenia in SwedenR01MH095034 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI STAHL, ELI A · 2012 to 2019
$3.6M
Medical Research Council G0800509Medical Research Council G0801418Medical Research Council MR/L010305/1Medical Research Council MR/P005748/1NIMH NIH HHS R01 MH077139NIMH NIH HHS R01 MH095034
6 · The paper itself

Abstract

Risk of schizophrenia is conferred by alleles occurring across the full spectrum of frequencies from common SNPs of weak effect through to ultra rare alleles, some of which may be moderately to highly penetrant. Previous studies have suggested that some of the risk of schizophrenia is attributable to uncommon alleles represented on Illumina exome arrays. Here, we present the largest study of exomic variation in schizophrenia to date, using samples from the United Kingdom and Sweden (10,011 schizophrenia cases and 13,791 controls). Single variants, genes, and gene sets were analyzed for association with schizophrenia. No single variant or gene reached genome-wide significance. Among candidate gene sets, we found significant enrichment for rare alleles (minor allele frequency [MAF] < 0.001) in genes intolerant of loss-of-function (LoF) variation and in genes whose messenger RNAs bind to fragile X mental retardation protein (FMRP). We further delineate the genetic architecture of schizophrenia by excluding a role for uncommon exomic variants (0.01 ≤ MAF ≥ 0.001) that confer a relatively large effect (odds ratio [OR] > 4). We also show risk alleles within this frequency range exist, but confer smaller effects and should be identified by larger studies.

Indexed as

ExomeMutationPolymorphism, Single NucleotideCase-Control StudiesCohort StudiesFollow-Up StudiesFragile X Messenger Ribonucleoprotein 1Gene FrequencyGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansPrognosisSchizophreniaFMR1 protein, humanFragile X Messenger Ribonucleoprotein 1associationexome chipFMRPrare variationschizophrenia

Identifiers

PMID28719003
PMCPMC5669020
OpenAlexW2736675292

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.