Evidence map›Paper›PMID 28717663›Full record

ArticleMolecular genetics & genomic medicine2017

Refining genotype-phenotype correlation in Alström syndrome through study of primary human fibroblasts.

Jian-Hua Chen, Tarekegn Geberhiwot, Timothy G Barrett, Richard Paisey, Robert K Semple

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 27 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Obesity-Related Ciliopathies: Focus on Advances of Biomarkers.International journal of molecular sciences · 2024
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. A novel missenseFrontiers in genetics · 2022
    Article
  10. Alström syndrome with a novel mutation ofWorld journal of clinical cases · 2021
    Article
  11. Article
  12. ALMS1 Regulates TGF-β Signaling and Morphology of Primary Cilia.Frontiers in cell and developmental biology · 2021
    Article
  13. Article
  14. Article
  15. The morbid genome of ciliopathies: an update.Genetics in medicine : official journal of the American College of Medical Genetics · 2020
    Article
  16. Article
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Jian-Hua ChenWellcome Trust-MRC Institute of Metabolic ScienceUniversity of CambridgeCambridgeUK.
Tarekegn GeberhiwotUniversity Hospital of BirminghamBirminghamUK.
Timothy G BarrettUniversity of BirminghamBirminghamUK.ORCID 0000-0002-6873-0750
Richard PaiseySouth Devon Healthcare NHS Foundation TrustTorbay HospitalTorquayUK.
Robert K SempleWellcome Trust-MRC Institute of Metabolic ScienceUniversity of CambridgeCambridgeUK.ORCID 0000-0001-6539-3069
University of Cambridge · GBNIHR Surgical Reconstruction and Microbiology Research Centre · GBTorbay Hospital · GBUniversity of Birmingham · GB

Funding

Medical Research Council MC_UU_12012/5Wellcome Trust
6 · The paper itself

Abstract

backgroundAlström syndrome (AS), featuring retinal dystrophy, neuronal deafness, cardiomyopathy, metabolic syndrome, and diffuse fibrosis, is caused by biallelic mutations in the centrosomal protein ALMS1. Genotype-phenotype correlation has been suggested without assessment of ALMS1 expression.

methodsALMS1 expression (real-time PCR and immunocytochemistry) and cilia formation (immunocytochemistry) were assessed in fibroblasts from deeply phenotyped volunteers diagnosed with AS recruited from a dedicated AS Service. Exome sequencing was used in two participants without convincing biallelic

resultsIn 16 of the patient cell lines examined, ALMS1 protein was undetectable (14 with biallelic loss-of-function (LoF) mutations), and in two, ALMS1 staining was equivocal (one with biallelic LoF mutations). In five lines, ALMS1 expression was normal using at least one fixation method (one with biallelic LoF mutations). These differences were not accounted for by major differences in

conclusionMilder or atypical presentations of AS should prompt genetic evaluation for alternative, clinically overlapping ciliopathies. A subgroup of patients with

Indexed as

ALMS1Alström syndromeciliagene expressiongenotype–phenotype correlationnonsense‐mediated decay

Identifiers

PMID28717663
PMCPMC5511801
OpenAlexW2615879925

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.