Evidence map›Paper›PMID 28717247›Full record

ArticleScientific reports2017

Characterization of HIV-1 integrase interaction with human Ku70 protein and initial implications for drug targeting.

Andrey N Anisenko, Ekaterina S Knyazhanskaya, Artur O Zalevsky, Julia Yu Agapkina, Aleksander I Sizov, Timofey S Zatsepin, Marina B Gottikh

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
  2. Article
  3. Complex Relationships between HIV-1 Integrase and Its Cellular Partners.International journal of molecular sciences · 2022
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. The Role of Ku70 as a Cytosolic DNA Sensor in Innate Immunity and Beyond.Frontiers in cellular and infection microbiology · 2021
    Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Andrey N AnisenkoFaculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Moscow, Russia.
Ekaterina S KnyazhanskayaChemistry Department, Lomonosov Moscow State University, Moscow, Russia. e.knyazhanskaya@gmail.com.
Artur O ZalevskyFaculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Moscow, Russia.
Julia Yu AgapkinaChemistry Department, Lomonosov Moscow State University, Moscow, Russia.
Aleksander I SizovChemistry Department, Lomonosov Moscow State University, Moscow, Russia.
Timofey S ZatsepinChemistry Department, Lomonosov Moscow State University, Moscow, Russia.ORCID 0000-0003-0030-9174
Marina B GottikhBelozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia.
Lomonosov Moscow State University · RUSkolkovo Institute of Science and Technology · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human Ku70/Ku80 protein is known to influence HIV-1 replication. One of the possible reasons may be the protection of integrase from proteasomal degradation by Ku70 subunit. We demonstrated that recombinant HIV-1 integrase and Ku70 form a stable complex, while no interaction of Ku70 with integrase from prototype foamy virus was observed. By analyzing protein subdomains we determined two binding sites in the structure of both Ku70 and integrase: the 51-160 a.a. region of integrase interacts with residues 251-438 of Ku70, whereas Ku70 N-terminal domain (1-250 a.a.) contacts an α6-helix in the 200-220 a.a. integrase region. Single substitutions within integrase (E212A or L213A) block the interaction with Ku70 thus indicating that the binding site formed by the 200-220 a.a. integrase region is crucial for complex formation. E212A/L213A substitutions decreased the integrase capacity to bind Ku70 in HEK293T cells. A conjugate of 2'-ОMe-GGUUUUUGUGU oligonucleotide with eosin is shown by molecular modeling to shield integrase residues E212/L213 and is effective in blocking complex formation of Ku70 with integrase what makes the complex between α6-helix and Ku70(1-250) a possible target for drug development.

Indexed as

Amino Acid SubstitutionBinding SitesCatalytic DomainDrug Delivery SystemsHEK293 CellsHIV-1HIV IntegraseHumansKu AutoantigenModels, MolecularMolecular Docking SimulationMutagenesis, Site-DirectedProtein BindingProtein DomainsProtein Structure, SecondaryRecombinant ProteinsHIV IntegraseKu AutoantigenRecombinant ProteinsXrcc6 protein, human

Identifiers

PMID28717247
PMCPMC5514147
OpenAlexW2736199480

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.