Evidence map›Paper›PMID 28717245›Full record

ArticleScientific reports2017

Development and Validation of a Three-gene Prognostic Signature for Patients with Hepatocellular Carcinoma.

Binghua Li, Wendu Feng, Ouyang Luo, Tiancheng Xu, Yajuan Cao, Hongyan Wu, Decai Yu, Yitao Ding

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed.

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  16. A robust CD8Frontiers in immunology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Binghua LiDepartment of Hepatobiliary Surgery, the Affliated Drum Tower Hospital, Medical School of Nanjing University, Nanjing, 210093, China.
Wendu FengDepartment of Hepatobiliary Surgery, the Affliated Drum Tower Hospital, Medical School of Nanjing University, Nanjing, 210093, China.
Ouyang LuoDepartment of Hepatobiliary Surgery, the Affliated Drum Tower Hospital, Medical School of Nanjing University, Nanjing, 210093, China.
Tiancheng XuDepartment of Hepatobiliary Surgery, the Affliated Drum Tower Hospital, Medical School of Nanjing University, Nanjing, 210093, China.
Yajuan CaoDepartment of Hepatobiliary Surgery, the Affliated Drum Tower Hospital, Medical School of Nanjing University, Nanjing, 210093, China.
Hongyan WuDepartment of Pathology, the Affliated Drum Tower Hospital, Medical School of Nanjing University, Nanjing, 210093, China.
Decai YuDepartment of Hepatobiliary Surgery, the Affliated Drum Tower Hospital, Medical School of Nanjing University, Nanjing, 210093, China. dryudecai@qq.com.
Yitao DingDepartment of Hepatobiliary Surgery, the Affliated Drum Tower Hospital, Medical School of Nanjing University, Nanjing, 210093, China. drdingyitao@sina.com.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hepatocellular carcinoma (HCC) is the leading cause of cancer-related death worldwide, because recurrence often occurs in most HCC patients undergoing hepatectomy. It is necessary to identify patients with high risk for recurrence and adopt effective therapies. An obstacle to monitor patients at high risk for poor prognosis has been the lack of useful predictive biomarkers. Fortunately, recent progress in system biology allows to screen the biomarkers for HCC prognosis in a high-throughput manner. In this study, we performed systematic Kaplan-Meier survival analysis of the whole mRNA transcriptomics based on the Cancer Genome Atlas project (TCGA) and developed a three-gene prognostic signature composing of three genes UPB1, SOCS2 and RTN3. The model was validated in two independent microarray data sets retrieved from Gene Expression Omnibus (GEO) and the expression pattern of these three predictive genes in HCC was confirmed by western blot and immunohistochemistry with our HCC samples. In conclusion, our results showed that this three-gene signature has prognostic value for HCC patients.

Indexed as

AmidohydrolasesBiomarkers, TumorCarcinoma, HepatocellularCarrier ProteinsFemaleHumansKaplan-Meier EstimateLiver NeoplasmsMaleMembrane ProteinsNeoplasm StagingNerve Tissue ProteinsPrognosisProportional Hazards ModelsSuppressor of Cytokine Signaling ProteinsAmidohydrolasesbeta-ureidopropionaseBiomarkers, TumorCarrier ProteinsMembrane ProteinsNerve Tissue ProteinsRTN3 protein, humanSOCS2 protein, humanSuppressor of Cytokine Signaling Proteins

Identifiers

PMID28717245
PMCPMC5514049

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.