Evidence map›Paper›PMID 28716916›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Genomic landscape of human diversity across Madagascar.

Denis Pierron, Margit Heiske, Harilanto Razafindrazaka, Ignace Rakoto, Nelly Rabetokotany, Bodo Ravololomanga, Lucien M-A Rakotozafy, Mireille Mialy Rakotomalala, Michel Razafiarivony, Bako Rasoarifetra and 26 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

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  19. Genomic perspectives on human dispersals during the Holocene.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

36 authors.

Denis PierronLaboratoire d'Anthropologie Moléculaire et Imagerie de Synthèse, Equipe de Médecine Évolutive, UMR 5288 CNRS, Université de Toulouse, 31073 Toulouse, France.
Margit HeiskeLaboratoire d'Anthropologie Moléculaire et Imagerie de Synthèse, Equipe de Médecine Évolutive, UMR 5288 CNRS, Université de Toulouse, 31073 Toulouse, France.
Harilanto RazafindrazakaLaboratoire d'Anthropologie Moléculaire et Imagerie de Synthèse, Equipe de Médecine Évolutive, UMR 5288 CNRS, Université de Toulouse, 31073 Toulouse, France.
Ignace RakotoInstitut de Civilisations/Musée d'Art et d'Archéologie, Université d'Antananarivo, Antananarivo 101, Madagascar.
Nelly RabetokotanyInstitut de Civilisations/Musée d'Art et d'Archéologie, Université d'Antananarivo, Antananarivo 101, Madagascar.
Bodo RavololomangaInstitut de Civilisations/Musée d'Art et d'Archéologie, Université d'Antananarivo, Antananarivo 101, Madagascar.
Lucien M-A RakotozafyInstitut de Civilisations/Musée d'Art et d'Archéologie, Université d'Antananarivo, Antananarivo 101, Madagascar.
Mireille Mialy RakotomalalaInstitut de Civilisations/Musée d'Art et d'Archéologie, Université d'Antananarivo, Antananarivo 101, Madagascar.
Michel RazafiarivonyInstitut de Civilisations/Musée d'Art et d'Archéologie, Université d'Antananarivo, Antananarivo 101, Madagascar.
Bako RasoarifetraInstitut de Civilisations/Musée d'Art et d'Archéologie, Université d'Antananarivo, Antananarivo 101, Madagascar.
Miakabola Andriamampianina RaharijesyInstitut de Civilisations/Musée d'Art et d'Archéologie, Université d'Antananarivo, Antananarivo 101, Madagascar.
Lolona RazafindralamboInstitut de Civilisations/Musée d'Art et d'Archéologie, Université d'Antananarivo, Antananarivo 101, Madagascar.
RamilisoninaInstitut de Civilisations/Musée d'Art et d'Archéologie, Université d'Antananarivo, Antananarivo 101, Madagascar.
Fulgence FanonyInstitut de Civilisations/Musée d'Art et d'Archéologie, Université d'Antananarivo, Antananarivo 101, Madagascar.
Sendra LejambleMonitoring of Monoclonal Antibodies Group in Europe (MAGE) Consortium, INSERM U688, Université Bordeaux 2, 33000 Bordeaux, France.
Olivier ThomasMonitoring of Monoclonal Antibodies Group in Europe (MAGE) Consortium, INSERM U688, Université Bordeaux 2, 33000 Bordeaux, France.
Ahmed Mohamed AbdallahMonitoring of Monoclonal Antibodies Group in Europe (MAGE) Consortium, INSERM U688, Université Bordeaux 2, 33000 Bordeaux, France.
Christophe RocherMonitoring of Monoclonal Antibodies Group in Europe (MAGE) Consortium, INSERM U688, Université Bordeaux 2, 33000 Bordeaux, France.
Amal ArachicheMonitoring of Monoclonal Antibodies Group in Europe (MAGE) Consortium, INSERM U688, Université Bordeaux 2, 33000 Bordeaux, France.
Laure TonasoLaboratoire d'Anthropologie Moléculaire et Imagerie de Synthèse, Equipe de Médecine Évolutive, UMR 5288 CNRS, Université de Toulouse, 31073 Toulouse, France.
Veronica Pereda-LothLaboratoire d'Anthropologie Moléculaire et Imagerie de Synthèse, Equipe de Médecine Évolutive, UMR 5288 CNRS, Université de Toulouse, 31073 Toulouse, France.
Stéphanie SchiavinatoLaboratoire d'Anthropologie Moléculaire et Imagerie de Synthèse, Equipe de Médecine Évolutive, UMR 5288 CNRS, Université de Toulouse, 31073 Toulouse, France.
Nicolas BrucatoLaboratoire d'Anthropologie Moléculaire et Imagerie de Synthèse, Equipe de Médecine Évolutive, UMR 5288 CNRS, Université de Toulouse, 31073 Toulouse, France.
Francois-Xavier RicautLaboratoire d'Anthropologie Moléculaire et Imagerie de Synthèse, Equipe de Médecine Évolutive, UMR 5288 CNRS, Université de Toulouse, 31073 Toulouse, France.
Pradiptajati KusumaLaboratoire d'Anthropologie Moléculaire et Imagerie de Synthèse, Equipe de Médecine Évolutive, UMR 5288 CNRS, Université de Toulouse, 31073 Toulouse, France.
Herawati SudoyoGenome Diversity and Diseases Laboratory, Eijkman Institute for Molecular Biology, Jakarta 10430, Indonesia.
Shengyu NiDepartment of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany.
Anne BolandCommissariat à l'Energie Atomique, Institut Génomique, Centre National de Génotypage, 91000 Evry, France.
Jean-Francois DeleuzeCommissariat à l'Energie Atomique, Institut Génomique, Centre National de Génotypage, 91000 Evry, France.
Philippe BeaujardL'Institut des Mondes Africains (IMAF)-CNRS, 94200 Ivry-sur-Seine, France.
Philippe GrangeDépartement Langues Etrangères Appliquées, Université de La Rochelle, 17042 La Rochelle cedex 1, France.
Sander AdelaarAsia Institute, University of Melbourne, Parkville VIC 3010, Australia.
Mark StonekingDepartment of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany.
Jean-Aimé RakotoarisoaInstitut de Civilisations/Musée d'Art et d'Archéologie, Université d'Antananarivo, Antananarivo 101, Madagascar; jarakoto@gmail.com radimilahych@gmail.com thierry.letellier@inserm.fr.
Chantal RadimilahyInstitut de Civilisations/Musée d'Art et d'Archéologie, Université d'Antananarivo, Antananarivo 101, Madagascar; jarakoto@gmail.com radimilahych@gmail.com thierry.letellier@inserm.fr.
Thierry LetellierLaboratoire d'Anthropologie Moléculaire et Imagerie de Synthèse, Equipe de Médecine Évolutive, UMR 5288 CNRS, Université de Toulouse, 31073 Toulouse, France; jarakoto@gmail.com radimilahych@gmail.com thierry.letellier@inserm.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although situated ∼400 km from the east coast of Africa, Madagascar exhibits cultural, linguistic, and genetic traits from both Southeast Asia and Eastern Africa. The settlement history remains contentious; we therefore used a grid-based approach to sample at high resolution the genomic diversity (including maternal lineages, paternal lineages, and genome-wide data) across 257 villages and 2,704 Malagasy individuals. We find a common Bantu and Austronesian descent for all Malagasy individuals with a limited paternal contribution from Europe and the Middle East. Admixture and demographic growth happened recently, suggesting a rapid settlement of Madagascar during the last millennium. However, the distribution of African and Asian ancestry across the island reveals that the admixture was sex biased and happened heterogeneously across Madagascar, suggesting independent colonization of Madagascar from Africa and Asia rather than settlement by an already admixed population. In addition, there are geographic influences on the present genomic diversity, independent of the admixture, showing that a few centuries is sufficient to produce detectable genetic structure in human populations.

Indexed as

Genetic VariationGenome, HumanGenome-Wide Association StudyAgedAsian PeopleBlack PeopleEthnicityFemaleHumansMadagascarMaleMiddle Agedgeneticsgenome-wide dataIndian OceanMalagasy originsproto-globalization

Identifiers

PMID28716916
PMCPMC5559028

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.