Evidence map›Paper›PMID 28716719›Full record

ArticleMolecular and biochemical parasitology2017

Metacyclic VSG expression site promoters are recognized by the same general transcription factor that is required for RNA polymerase I transcription of bloodstream expression sites.

Nikolay G Kolev, Arthur Günzl, Christian Tschudi

Open access · greenAbstract read
In one paragraph

Article in Molecular and biochemical parasitology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Fatty acid uptake inFrontiers in cellular and infection microbiology · 2022
    Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. The vault RNA ofThe Journal of biological chemistry · 2019
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Nikolay G KolevDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06536, USA. Electronic address: nikolay.kolev@yale.edu.
Arthur GünzlDepartment of Genetics and Genome Sciences, University of Connecticut Health Center, Farmington, CT 06030, USA.
Christian TschudiDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06536, USA.
Yale University · USUConn Health · US

Funding

TRANSCRIPTION AND RNA PROCESSING IN TRYPANOSOMESR01AI028798 · NIAID · YALE UNIVERSITY · PI TSCHUDI, CHRISTIAN · 1990 to 2020
$10.9M
Mechanism of Infectivity Acquisition in African TrypanosomesR01AI110325 · NIAID · YALE UNIVERSITY · PI TSCHUDI, CHRISTIAN · 2014 to 2023
$4.4M
RNA METABOLISM IN TRYPANOSOMESR37AI028798 · NIAID · YALE UNIVERSITY · PI ULLU, ELISABETTA · 2010 to 2013
$2.9M
NIAID NIH HHS R01 AI028798NIAID NIH HHS R01 AI110325NIAID NIH HHS R37 AI028798
6 · The paper itself

Abstract

Infectious metacyclic Trypanosoma brucei cells develop in the salivary glands of tsetse flies. A critical aspect of the developmental program leading to acquisition of infectivity is the synthesis of a variant surface glycoprotein (VSG) coat. Metacyclic VSG genes are transcribed from a set of specialized VSG expression sites (ESs) that differ from bloodstream VSG ESs by being monocistronic, being significantly shorter, lacking long stretches of 70-bp repeats, and having distinct promoter sequences. Both metacyclic and bloodstream VSG ESs are transcribed by the multifunctional T. brucei RNA polymerase I (Pol I), however the factor that recognizes the divergent metacyclic VSG ES promoters and recruits Pol I during the development to infectious cells remains unknown. We used an in vitro assay to show that the promoters for both metacyclic and bloodstream VSG ESs are recognized by the same class I transcription factor A (CITFA). This general Pol I transcription initiation factor was previously shown to be essential for the transcription of bloodstream VSG genes, procyclin genes and rRNA genes, and was demonstrated to have distinct binding affinities for these three types of promoters. We now show that differences in the sequence of individual metacyclic VSG ESs promoters determine different affinities for CITFA.

Indexed as

Gene Expression RegulationPromoter Regions, GeneticBase SequenceBinding SitesMutationNucleotide MotifsProtein BindingRNA Polymerase ITranscription FactorsTranscription, GeneticTrypanosoma brucei bruceiVariant Surface Glycoproteins, TrypanosomaRNA Polymerase ITranscription FactorsVariant Surface Glycoproteins, TrypanosomaCITFAMetacyclicsPol ITranscriptionTrypanosoma bruceiVSG

Identifiers

PMID28716719
PMCPMC5582990
OpenAlexW2734665506

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.