Evidence map›Paper›PMID 28715480›Full record

ArticlePloS one2017

Tales of diversity: Genomic and morphological characteristics of forty-six Arthrobacter phages.

Karen K Klyczek, J Alfred Bonilla, Deborah Jacobs-Sera, Tamarah L Adair, Patricia Afram, Katherine G Allen, Megan L Archambault, Rahat M Aziz, Filippa G Bagnasco, Sarah L Ball and 127 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 43 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

137 authors at 11 institutions in 1 country.

Karen K KlyczekBiology Department, University of Wisconsin-River Falls, River Falls, Wisconsin, United States of America.
J Alfred BonillaBiology Department, University of Wisconsin-River Falls, River Falls, Wisconsin, United States of America.
Deborah Jacobs-SeraDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Tamarah L AdairDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Patricia AframDepartment of Science, Cabrini University, Radnor, Pennsylvania, United States of America.
Katherine G AllenBiology Department, Western Kentucky University, Bowling Green, Kentucky, United States of America.
Megan L ArchambaultBiology Department, University of Wisconsin-River Falls, River Falls, Wisconsin, United States of America.
Rahat M AzizDepartment of Biological Sciences, University of North Texas, Denton, Texas, United States of America.
Filippa G BagnascoDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Sarah L BallCenter for Life Sciences Education, The Ohio State University, Columbus, Ohio, United States of America.
Natalie A BarrettBiology Department, Saint Joseph's University, Philadelphia, Pennsylvania, United States of America.
Robert C BenjaminDepartment of Biological Sciences, University of North Texas, Denton, Texas, United States of America.
Christopher J BlasiBiology Department, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Katherine BorstDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Mary A BraunDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Haley BroomellDepartment of Science, Cabrini University, Radnor, Pennsylvania, United States of America.
Conner B BrownBiology Department, Western Kentucky University, Bowling Green, Kentucky, United States of America.
Zachary S BrynellDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Ashley B BueBiology Department, University of Wisconsin-River Falls, River Falls, Wisconsin, United States of America.
Sydney O BurkeDepartment of Biology, Baylor University, Waco, Texas, United States of America.
William CasazzaDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Julia A CautelaBiology Department, Saint Joseph's University, Philadelphia, Pennsylvania, United States of America.
Kevin ChenDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Nitish S ChimalakondaDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Dylan ChudoffDepartment of Science, Cabrini University, Radnor, Pennsylvania, United States of America.
Jade A ConnorDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Trevor S CrossDepartment of Science, Cabrini University, Radnor, Pennsylvania, United States of America.
Kyra N CurtisDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Jessica A DahlkeBiology Department, University of Wisconsin-River Falls, River Falls, Wisconsin, United States of America.
Bethany M DeatonDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Sarah J DegrooteBiology Department, University of Wisconsin-River Falls, River Falls, Wisconsin, United States of America.
Danielle M DeNigrisBiology Department, Saint Joseph's University, Philadelphia, Pennsylvania, United States of America.
Katherine C DeRuffBiology Department, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Milan DolanBiology Department, Western Kentucky University, Bowling Green, Kentucky, United States of America.
David DunbarDepartment of Science, Cabrini University, Radnor, Pennsylvania, United States of America.
Marisa S EganBiology Department, Saint Joseph's University, Philadelphia, Pennsylvania, United States of America.
Daniel R EvansDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Abby K FahnestockDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Amal FarooqDepartment of Biological Sciences, University of North Texas, Denton, Texas, United States of America.
Garrett FinnBiology Department, University of Wisconsin-River Falls, River Falls, Wisconsin, United States of America.
Christopher R FratusDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Bobby L GaffneyBiology Department, Western Kentucky University, Bowling Green, Kentucky, United States of America.
Rebecca A GarlenaDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Kelly E GarriganBiology Department, Saint Joseph's University, Philadelphia, Pennsylvania, United States of America.
Bryan C GibbonDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Michael A GoeddeBiology Department, Western Kentucky University, Bowling Green, Kentucky, United States of America.
Carlos A Guerrero BustamanteDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Melinda HarrisonDepartment of Science, Cabrini University, Radnor, Pennsylvania, United States of America.
Megan C HartwellBiology Department, Saint Joseph's University, Philadelphia, Pennsylvania, United States of America.
Emily L HeckmanBiological Sciences, Lehigh University, Bethlehem, Pennsylvania, United States of America.
Jennifer HuangDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Lee E HughesDepartment of Biological Sciences, University of North Texas, Denton, Texas, United States of America.
Kathryn M HyduchakBiology Department, Saint Joseph's University, Philadelphia, Pennsylvania, United States of America.
Aswathi E JacobBiology Department, Saint Joseph's University, Philadelphia, Pennsylvania, United States of America.
Machika KakuDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Allen W KarstensDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Margaret A KennaBiological Sciences, Lehigh University, Bethlehem, Pennsylvania, United States of America.
Susheel KhetarpalDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Rodney A KingBiology Department, Western Kentucky University, Bowling Green, Kentucky, United States of America.
Amanda L KobokovichBiology Department, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Hannah KolevDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Sai A KondeDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Elizabeth KrieseBiology Department, University of Wisconsin-River Falls, River Falls, Wisconsin, United States of America.
Morgan E LameyBiology Department, Saint Joseph's University, Philadelphia, Pennsylvania, United States of America.
Carter N LantzDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Jonathan S LapinDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Temiloluwa O LawsonBiology Department, University of Wisconsin-River Falls, River Falls, Wisconsin, United States of America.
In Young LeeDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Scott M LeeDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Julia Y Lee-SoetyBiology Department, Saint Joseph's University, Philadelphia, Pennsylvania, United States of America.
Emily M LehmannBiology Department, University of Wisconsin-River Falls, River Falls, Wisconsin, United States of America.
Shawn C LondonBiology Department, Saint Joseph's University, Philadelphia, Pennsylvania, United States of America.
A Javier LopezDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Kelly C LynchBiology Department, Western Kentucky University, Bowling Green, Kentucky, United States of America.
Catherine M MageeneyBiological Sciences, Lehigh University, Bethlehem, Pennsylvania, United States of America.
Tetyana MartynyukBiology Department, Saint Joseph's University, Philadelphia, Pennsylvania, United States of America.
Kevin J MathewDepartment of Biological Sciences, University of North Texas, Denton, Texas, United States of America.
Travis N MavrichDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Christopher M McDanielBiology Department, Western Kentucky University, Bowling Green, Kentucky, United States of America.
Hannah McDonaldDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
C Joel McManusDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Jessica E MedranoBiology Department, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Francis E MeleBiology Department, Saint Joseph's University, Philadelphia, Pennsylvania, United States of America.
Jennifer E MenningerBiology Department, Saint Joseph's University, Philadelphia, Pennsylvania, United States of America.
Sierra N MillerDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Josephine E MinickDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Courtney T NabuaBiology Department, Saint Joseph's University, Philadelphia, Pennsylvania, United States of America.
Caroline K NapoliBiology Department, Saint Joseph's University, Philadelphia, Pennsylvania, United States of America.
Martha NkangabwaDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Elizabeth A OatesBiology Department, Western Kentucky University, Bowling Green, Kentucky, United States of America.
Cassandra T OttDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Sarah K PellerinoBiology Department, University of Wisconsin-River Falls, River Falls, Wisconsin, United States of America.
William J PinamontBiology Department, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Ross T PirnieBiology Department, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Marie C PizzornoBiology Department, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Emilee J PlautzBiology Department, University of Wisconsin-River Falls, River Falls, Wisconsin, United States of America.
Welkin H PopeDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Katelyn M PruettDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Gabbi RickstrewDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Patrick A RimpleDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Claire A RinehartBiology Department, Western Kentucky University, Bowling Green, Kentucky, United States of America.
Kayla M RobinsonDepartment of Biological Sciences, University of North Texas, Denton, Texas, United States of America.
Victoria A RoseDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Daniel A RussellDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Amelia M SchickDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Julia SchlossmanDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Victoria M SchneiderDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Chloe A SellsDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Jeremy W SiekerDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Morgan P SilvaDepartment of Biological Sciences, University of North Texas, Denton, Texas, United States of America.
Marissa M SilviBiology Department, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Stephanie E SimonDepartment of Biological Sciences, University of North Texas, Denton, Texas, United States of America.
Amanda K StaplesBiology Department, Western Kentucky University, Bowling Green, Kentucky, United States of America.
Isabelle L SteedBiology Department, University of Wisconsin-River Falls, River Falls, Wisconsin, United States of America.
Emily L StoweBiology Department, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Noah A StuevenBiology Department, University of Wisconsin-River Falls, River Falls, Wisconsin, United States of America.
Porter T SwartzBiology Department, University of Wisconsin-River Falls, River Falls, Wisconsin, United States of America.
Emma A SweetBiology Department, University of Wisconsin-River Falls, River Falls, Wisconsin, United States of America.
Abigail T SweetmanBiology Department, Saint Joseph's University, Philadelphia, Pennsylvania, United States of America.
Corrina TenderDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Katrina TerryDepartment of Science, Cabrini University, Radnor, Pennsylvania, United States of America.
Chrystal ThomasDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Daniel S ThomasDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Allison R ThompsonBiology Department, Western Kentucky University, Bowling Green, Kentucky, United States of America.
Lorianna VanderveenDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Rohan VarmaDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Hannah L VaughtBiology Department, University of Wisconsin-River Falls, River Falls, Wisconsin, United States of America.
Quynh D VoDepartment of Biological Sciences, University of North Texas, Denton, Texas, United States of America.
Zachary T VonbergBiology Department, University of Wisconsin-River Falls, River Falls, Wisconsin, United States of America.
Vassie C WareBiological Sciences, Lehigh University, Bethlehem, Pennsylvania, United States of America.
Yasmene M WarradDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Kaitlyn E WathenBiology Department, Western Kentucky University, Bowling Green, Kentucky, United States of America.
Jonathan L WeinsteinBiology Department, Saint Joseph's University, Philadelphia, Pennsylvania, United States of America.
Jacqueline F WyperDepartment of Biology, Baylor University, Waco, Texas, United States of America.
Jakob R YankauskasBiology Department, Bucknell University, Lewisburg, Pennsylvania, United States of America.
Christine ZhangDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Graham F HatfullDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.ORCID http://orcid.org/0000-0002-6705-6821
Baylor University · USCarnegie Mellon University · USSaint Joseph's University · USUniversity of Wisconsin–River Falls · USWestern Kentucky University · USUniversity of Pittsburgh · USBucknell University · USUniversity of North Texas · USCabrini University · USLehigh University · USThe Ohio State University · US

Funding

WKU Lead Faculty AwardP20GM103436 · NIGMS · UNIVERSITY OF LOUISVILLE · PI ERIC C ROUCHKA · 2012 to 2026
$60.1M
Dynamics of viral host range evolutionR01GM116884 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HATFULL, GRAHAM F. · 2015 to 2019
$2.0M
NIGMS NIH HHS P20 GM103436NIGMS NIH HHS R01 GM116884
6 · The paper itself

Abstract

The vast bacteriophage population harbors an immense reservoir of genetic information. Almost 2000 phage genomes have been sequenced from phages infecting hosts in the phylum Actinobacteria, and analysis of these genomes reveals substantial diversity, pervasive mosaicism, and novel mechanisms for phage replication and lysogeny. Here, we describe the isolation and genomic characterization of 46 phages from environmental samples at various geographic locations in the U.S. infecting a single Arthrobacter sp. strain. These phages include representatives of all three virion morphologies, and Jasmine is the first sequenced podovirus of an actinobacterial host. The phages also span considerable sequence diversity, and can be grouped into 10 clusters according to their nucleotide diversity, and two singletons each with no close relatives. However, the clusters/singletons appear to be genomically well separated from each other, and relatively few genes are shared between clusters. Genome size varies from among the smallest of siphoviral phages (15,319 bp) to over 70 kbp, and G+C contents range from 45-68%, compared to 63.4% for the host genome. Although temperate phages are common among other actinobacterial hosts, these Arthrobacter phages are primarily lytic, and only the singleton Galaxy is likely temperate.

Indexed as

Genetic VariationGenomicsArthrobacterBacteriophagesGenome, Viral

Identifiers

PMID28715480
PMCPMC5513430
OpenAlexW2736241414

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.