Evidence map›Paper›PMID 28714977›Full record

ArticleNature genetics2017

The promise of discovering population-specific disease-associated genes in South Asia.

Nathan Nakatsuka, Priya Moorjani, Niraj Rai, Biswanath Sarkar, Arti Tandon, Nick Patterson, Gandham SriLakshmi Bhavani, Katta Mohan Girisha, Mohammed S Mustak, Sudha Srinivasan and 7 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 102 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
102citing papers in PubMed, 4 pooled it
13.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

102 citing papers in PubMed, 4 syntheses or guidelines pooled it, 193 citations in OpenAlex.

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  16. A SNP panel for co-analysis of capture and shotgun ancient DNA data.bioRxiv : the preprint server for biology · 2025
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42 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 9 institutions in 2 countries.

Nathan NakatsukaDepartment of Genetics, Harvard Medical School, Boston, Massachusetts, USA.
Priya MoorjaniDepartment of Biological Sciences, Columbia University, New York, New York, USA.
Niraj RaiCSIR-Centre for Cellular and Molecular Biology, Hyderabad, India.
Biswanath SarkarAnthropological Survey of India, Kolkata, India.
Arti TandonDepartment of Genetics, Harvard Medical School, Boston, Massachusetts, USA.
Nick PattersonBroad Institute of Harvard and Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Gandham SriLakshmi BhavaniDepartment of Medical Genetics, Kasturba Medical College, Manipal University, Manipal, India.
Katta Mohan GirishaDepartment of Medical Genetics, Kasturba Medical College, Manipal University, Manipal, India.ORCID http://orcid.org/0000-0002-0139-8239
Mohammed S MustakDepartment of Applied Zoology, Mangalore University, Mangalore, India.
Sudha SrinivasanCentre for Human Genetics, Bangalore, India.ORCID http://orcid.org/0000-0003-0777-4044
Amit KaushikAmity Institute of Biotechnology, Amity University, Noida, India.
Saadi Abdul VahabSchool of Life Sciences, Manipal University, Manipal, India.
Sujatha M JagadeeshFetal Care Research Foundation, Chennai, India.
Kapaettu SatyamoorthySchool of Life Sciences, Manipal University, Manipal, India.
Lalji SinghGenome Foundation, Hyderabad, India.
David ReichDepartment of Genetics, Harvard Medical School, Boston, Massachusetts, USA.
Kumarasamy ThangarajCSIR-Centre for Cellular and Molecular Biology, Hyderabad, India.
Broad Institute · USManipal Academy of Higher Education · INCentre for Cellular and Molecular Biology · INAmity University · INAnthropological Survey of India · INCentre For Human Genetics · INFetal Care Research Foundation · INHarvard University · USMangalore University · IN

Funding

Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
Methods for Genome-wide Association Studies in Admixed PopulationsR01HG006399 · NHGRI · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI PRICE, ALKES L · 2011 to 2024
$6.3M
Population mixture in evolutionary and medical geneticsR01GM100233 · NIGMS · HARVARD MEDICAL SCHOOL · PI PATTERSON, NICK J, REICH, DAVID E · 2012 to 2019
$2.7M
NHGRI NIH HHS R01 HG006399NIGMS NIH HHS R01 GM100233NIGMS NIH HHS T32 GM007753
6 · The paper itself

Abstract

The more than 1.5 billion people who live in South Asia are correctly viewed not as a single large population but as many small endogamous groups. We assembled genome-wide data from over 2,800 individuals from over 260 distinct South Asian groups. We identified 81 unique groups, 14 of which had estimated census sizes of more than 1 million, that descend from founder events more extreme than those in Ashkenazi Jews and Finns, both of which have high rates of recessive disease due to founder events. We identified multiple examples of recessive diseases in South Asia that are the result of such founder events. This study highlights an underappreciated opportunity for decreasing disease burden among South Asians through discovery of and testing for recessive disease-associated genes.

Indexed as

Founder EffectAlgorithmsAsiaAsian PeopleDiseaseGene FrequencyGenes, RecessiveGenetic Predisposition to DiseaseGenetics, PopulationGenome-Wide Association StudyGenotypeGeographyHaplotypesHumansModels, GeneticPolymorphism, Single Nucleotide

Identifiers

PMID28714977
PMCPMC5675555
OpenAlexW2950617339

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.