ArticleFrontiers in plant science2017
Identification of Conserved and Novel MicroRNAs in Blueberry.
Article in Frontiers in plant science, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed.
- The Therapeutic Effects of Blueberry-Treated Stem Cell-Derived Extracellular Vesicles in Ischemic Stroke.International journal of molecular sciences · 2024Article
- Identification of miRNAs Mediating Seed Storability of Maize during Germination Stage by High-Throughput Sequencing, Transcriptome and Degradome Sequencing.International journal of molecular sciences · 2022Article
- Conservation and Diversity of miR166 Family Members From Highbush Blueberry (Frontiers in genetics · 2022Article
- There and back again; historical perspective and future directions forHorticulture research · 2022Article
- Identification of microRNAs from Medicinal PlantPlants (Basel, Switzerland) · 2021Article
- High-quality reference genome and annotation aids understanding of berry development for evergreen blueberry (Vaccinium darrowii).Horticulture research · 2021Article
- Dynamic regulation of small RNAs in anthocyanin accumulation during blueberry fruit maturation.Scientific reports · 2021Article
- A novel microRNA boosts hyper-β-oxidation of fatty acids in liver by impeding CEP350-mediated sequestration of PPARα and thus restricts chronic hepatitis C.RNA biology · 2020Article
- Identification of anthocyanin biosynthesis related microRNAs and total microRNAs inJournal of genetics · 2020Article
- Full-length transcriptome sequencing provides insights into the evolution of apocarotenoid biosynthesis inComputational and structural biotechnology journal · 2020Article
- Identification of novel microRNAs and their targets in Chlorophytum borivilianum by small RNA and degradome sequencing.Non-coding RNA research · 2019Article
- Identification of miRNAs involved in fruit ripening by deep sequencing of Olea europaea L. transcriptome.PloS one · 2019Article
- Identification of microRNAs associated with the exogenous spermidine-mediated improvement of high-temperature tolerance in cucumber seedlings (Cucumis sativus L.).BMC genomics · 2018Article
- Identification of Blueberry miRNAs and Their Targets Based on High-Throughput Sequencing and Degradome Analyses.International journal of molecular sciences · 2018Article
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
MicroRNAs (miRNAs) are a class of small endogenous RNAs that play important regulatory roles in cells by negatively affecting gene expression at both transcriptional and post-transcriptional levels. There have been extensive studies aiming to identify miRNAs and to elucidate their functions in various plant species. In the present study, we employed the high-throughput sequencing technology to profile miRNAs in blueberry fruits. A total of 9,992,446 small RNA tags with sizes ranged from 18 to 30 nt were obtained, indicating that blueberry fruits have a large and diverse small RNA population. Bioinformatic analysis identified 412 conserved miRNAs belonging to 29 families, and 35 predicted novel miRNAs that are likely to be unique to blueberries. Among them, expression profiles of five conserved miRNAs were validated by stem loop qRT-PCR. Furthermore, the potential target genes of conserved and novel miRNAs were predicted and subjected to Gene Ontology (GO) annotation. Enrichment analysis of the GO-represented biological processes and molecular functions revealed that these target genes were potentially involved in a wide range of metabolic pathways and developmental processes. Particularly, anthocyanin biosynthesis has been predicted to be directly or indirectly regulated by diverse miRNA families. This study is the first report on genome-wide miRNA profile analysis in blueberry and it provides a useful resource for further elucidation of the functional roles of miRNAs during fruit development and ripening.
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