Evidence map›Paper›PMID 28710561›Full record

ArticleMolecular genetics and genomics : MGG2017

Genetic architecture of wild soybean (Glycine soja) response to soybean cyst nematode (Heterodera glycines).

Hengyou Zhang, Qijian Song, Joshua D Griffin, Bao-Hua Song

Open access · greenAbstract read
In one paragraph

Article in Molecular genetics and genomics : MGG, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
7.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
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  3. Review
  4. Article
  5. Evaluating the Response ofPlants (Basel, Switzerland) · 2023
    Article
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  7. Article
  8. Article
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  11. Review
  12. Article
  13. Genome-Wide Analysis ofFrontiers in plant science · 2022
    Article
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  15. Article
  16. Nested association mapping of important agronomic traits in three interspecific soybean populations.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Article
  17. Article
  18. Article
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Hengyou ZhangDepartment of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC, 28223, USA.
Qijian SongSoybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD, 20705, USA.
Joshua D GriffinSAS Institute, Cary, NC, 27513, USA.
Bao-Hua SongDepartment of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC, 28223, USA. bsong5@uncc.edu.ORCID http://orcid.org/0000-0003-3537-7783
University of North Carolina at Charlotte · USAgricultural Research Service · USSAS Institute (United States) · US

Funding

Molecular basis and evolution of complex trait variation with significance in human healthR15GM122029 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHARLOTTE · PI SONG, BAO-HUA · 2016 to 2016
$439k
NIGMS NIH HHS R15 GM122029
6 · The paper itself

Abstract

The soybean cyst nematode (SCN) is one of the most destructive pathogens of soybean plants worldwide. Host-plant resistance is an environmentally friendly method to mitigate SCN damage. To date, the resistant soybean cultivars harbor limited genetic variation, and some are losing resistance. Thus, a better understanding of the genetic mechanisms of the SCN resistance, as well as developing diverse resistant soybean cultivars, is urgently needed. In this study, a genome-wide association study (GWAS) was conducted using 1032 wild soybean (Glycine soja) accessions with over 42,000 single-nucleotide polymorphisms (SNPs) to understand the genetic architecture of G. soja resistance to SCN race 1. Ten SNPs were significantly associated with the response to race 1. Three SNPs on chromosome 18 were localized within the previously identified quantitative trait loci (QTLs), and two of which were localized within a strong linkage disequilibrium block encompassing a nucleotide-binding (NB)-ARC disease resistance gene (Glyma.18G102600). Genes encoding methyltransferases, the calcium-dependent signaling protein, the leucine-rich repeat kinase family protein, and the NB-ARC disease resistance protein, were identified as promising candidate genes. The identified SNPs and candidate genes can not only shed light on the molecular mechanisms underlying SCN resistance, but also can facilitate soybean improvement employing wild genetic resources.

Indexed as

Genes, PlantHost-Parasite InteractionsAnimalsChromosomes, Human, Pair 18Genome-Wide Association StudyGlycine maxHumansLinkage DisequilibriumNematodaCandidate genesCrop wild relativesGenome-wide association study (GWAS)Single-nucleotide polymorphisms (SNPs)Soybean cyst nematode (SCN)Wild soybean

Identifiers

PMID28710561
PMCPMC5680095
OpenAlexW2735462464

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.