Evidence map›Paper›PMID 28710447›Full record

ArticleScientific reports2017

Cryo-EM reconstruction of the Cafeteria roenbergensis virus capsid suggests novel assembly pathway for giant viruses.

Chuan Xiao, Matthias G Fischer, Duer M Bolotaulo, Nancy Ulloa-Rondeau, Gustavo A Avila, Curtis A Suttle

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
8.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 50 citations in OpenAlex.

  1. Why did some viruses evolve to be giants while others did not?Proceedings of the National Academy of Sciences of the United States of America · 2026
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  6. Electron Tomography as a Tool to Study SARS-CoV-2 Morphology.International journal of molecular sciences · 2024
    Review
  7. Article
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  10. Review
  11. Frontiers in microbiology · 2023
    Review
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  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Chuan XiaoDepartment of Chemistry, University of Texas at El Paso, El Paso, TX, 79968, USA. cxiao@utep.edu.
Matthias G FischerMax Planck Institute for Medical Research, Department of Biomolecular Mechanisms, 69120, Heidelberg, Germany. Matthias.Fischer@mpimf-heidelberg.mpg.de.
Duer M BolotauloDepartment of Chemistry, University of Texas at El Paso, El Paso, TX, 79968, USA.
Nancy Ulloa-RondeauDepartment of Chemistry, University of Texas at El Paso, El Paso, TX, 79968, USA.ORCID 0000-0002-7742-7630
Gustavo A AvilaDepartment of Chemistry, University of Texas at El Paso, El Paso, TX, 79968, USA.
Curtis A SuttleDepartments of Earth, Ocean & Atmospheric Sciences, Microbiology & Immunology, and Botany, and The Institute for the Oceans and Fisheries, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada; Canadian Institute for Advanced Research, Toronto, ON, M5G 1M1, Canada.
The University of Texas at El Paso · USCanadian Institute for Advanced Research · CAMax Planck Institute for Medical Research · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Whereas the protein composition and overall shape of several giant virus capsids have been described, the mechanism by which these large capsids assemble remains enigmatic. Here, we present a reconstruction of the capsid of Cafeteria roenbergensis virus (CroV), one of the largest viruses analyzed by cryo-electron microscopy (cryo-EM) to date. The CroV capsid has a diameter of 3,000 Å and a Triangulation number of 499. Unlike related mimiviruses, the CroV capsid is not decorated with glycosylated surface fibers, but features 30 Å-long surface protrusions that are formed by loops of the major capsid protein. Based on the orientation of capsomers in the cryo-EM reconstruction, we propose that the capsids of CroV and related giant viruses are assembled by a newly conceived assembly pathway that initiates at a five-fold vertex and continuously proceeds outwards in a spiraling fashion.

Indexed as

Cryoelectron MicroscopyAmino Acid SequenceCapsidCapsid ProteinsGenome, ViralGiant VirusesMimiviridaeVirionVirus AssemblyCapsid Proteins

Identifiers

PMID28710447
PMCPMC5511168
OpenAlexW2735194366

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.