Evidence map›Paper›PMID 28709932›Full record

ArticleMetabolic engineering2017

Assessing glycolytic flux alterations resulting from genetic perturbations in E. coli using a biosensor.

Christina E Lehning, Solvej Siedler, Mostafa M H Ellabaan, Morten O A Sommer

Abstract read
In one paragraph

Article in Metabolic engineering, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Recent trends in biocatalysis.Chemical Society reviews · 2021
    Review
  5. Article
  6. Article
  7. Article
  8. A protocatechuate biosensor forMetabolic engineering communications · 2018
    Article
  9. Synthetic addiction extends the productive life time of engineeredProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  10. Enhanced Metabolite Productivity ofFrontiers in bioengineering and biotechnology · 2018
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Christina E LehningNovo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet Building 220, 2800 Lyngby, Denmark.
Solvej SiedlerNovo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet Building 220, 2800 Lyngby, Denmark.
Mostafa M H EllabaanNovo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet Building 220, 2800 Lyngby, Denmark.
Morten O A SommerNovo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet Building 220, 2800 Lyngby, Denmark. Electronic address: msom@bio.dtu.dk.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We describe the development of an optimized glycolytic flux biosensor and its application in detecting altered flux in a production strain and in a mutant library. The glycolytic flux biosensor is based on the Cra-regulated ppsA promoter of E. coli controlling fluorescent protein synthesis. We validated the glycolytic flux dependency of the biosensor in a range of different carbon sources in six different E. coli strains and during mevalonate production. Furthermore, we studied the flux-altering effects of genome-wide single gene knock-outs in E. coli in a multiplex FlowSeq experiment. From a library consisting of 2126 knock-out mutants, we identified 3 mutants with high-flux and 95 mutants with low-flux phenotypes that did not have severe growth defects. This approach can improve our understanding of glycolytic flux regulation improving metabolic models and engineering efforts.

Indexed as

Escherichia coliEscherichia coli ProteinsGene Knockdown TechniquesPromoter Regions, GeneticPyruvate SynthaseBiosensing TechniquesGlycolysisEscherichia coli ProteinsppsA protein, E coliPyruvate SynthaseBiosensorCraEscherichia coliGenome-wide screeningGlycolytic fluxTranscription factor

Identifiers

PMID28709932
PMCPMC5555440

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.